Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   CUZ62_RS00185 Genome accession   NZ_CP024809
Coordinates   43589..45277 (-) Length   562 a.a.
NCBI ID   WP_080363987.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain 83131A     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38589..50277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUZ62_RS00155 (CUZ62_00155) - 38858..39169 (-) 312 WP_048667853.1 DUF960 family protein -
  CUZ62_RS00165 (CUZ62_00165) - 39262..39603 (-) 342 WP_048667852.1 SAUGI family uracil-DNA glycosylase inhibitor -
  CUZ62_RS00170 (CUZ62_00170) - 40163..41344 (-) 1182 WP_066031985.1 NupC/NupG family nucleoside CNT transporter -
  CUZ62_RS00175 (CUZ62_00175) - 41355..42266 (-) 912 WP_049395052.1 pseudouridine-5'-phosphate glycosidase -
  CUZ62_RS00180 (CUZ62_00180) - 42250..43359 (-) 1110 WP_048667849.1 carbohydrate kinase -
  CUZ62_RS00185 (CUZ62_00185) ccrB 43589..45277 (-) 1689 WP_080363987.1 cassette chromosome recombinase CcrB Machinery gene
  CUZ62_RS00190 (CUZ62_00190) ccrA 45274..46635 (-) 1362 WP_053015794.1 cassette chromosome recombinase CcrA Machinery gene
  CUZ62_RS00195 (CUZ62_00195) - 46822..47451 (-) 630 Protein_36 hypothetical protein -
  CUZ62_RS00200 (CUZ62_00200) - 47460..47798 (+) 339 Protein_37 recombinase family protein -
  CUZ62_RS00205 (CUZ62_00205) - 47910..48269 (-) 360 WP_001631039.1 hypothetical protein -
  CUZ62_RS00210 (CUZ62_00210) - 48476..48802 (+) 327 WP_000391495.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 64678.39 Da        Isoelectric Point: 9.8330

>NTDB_id=255560 CUZ62_RS00185 WP_080363987.1 43589..45277(-) (ccrB) [Staphylococcus haemolyticus strain 83131A]
MKQLKKKRIGLYARVSTEIQTNGYSIQSQLNQLKEYCQFQGYEVVDEYTDCGISGKTTQRPELQRMLKDANDGKLDCIMV
YKTNRLARNTSDLLTIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFAEFERNTIIENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKAKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKKRKGLNEEPIIADGKHAPIIDKALRDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNERSQIDVSSLNHDIAYKQSQCEE
IKAKMHTLTKTIEDSPDLDSVLKPTILSYQDELNQINNQIHQLEQDKQAESPHYDADMIANVLQAIFKDIDKLEKSQLKS
LYLTIIDRIDIRKDEHHKKQFYVTLKLNNEIIKQLFNNHPLGSGTEIIFSQNLFRCPTPARMTRFEKSLIQAHFQISQLL
TK

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=255560 CUZ62_RS00185 WP_080363987.1 43589..45277(-) (ccrB) [Staphylococcus haemolyticus strain 83131A]
ATGAAACAACTCAAAAAGAAACGTATTGGATTATACGCACGTGTATCAACTGAAATCCAGACGAACGGCTATAGCATTCA
AAGCCAGTTAAATCAACTTAAAGAGTATTGTCAATTTCAAGGATATGAAGTCGTTGATGAATATACCGATTGTGGTATAT
CGGGTAAAACCACGCAACGTCCTGAACTACAACGTATGTTAAAAGATGCAAACGACGGTAAGTTAGATTGTATTATGGTC
TACAAAACCAATCGTTTAGCTAGAAATACCTCAGATTTATTAACTATTGTCGAAGAATTATATAAGATTAATGTCGAATT
TTTTAGTCTAACTGAAAAAATAGAAATTGCCAGCTCAACAGGTAAATTGATGCTCCAAATTTTAGCCAGCTTCGCAGAAT
TTGAAAGAAATACGATTATAGAAAACGTTTATAACGGTCAAAGACAACGAGCGATTGAAGGTTATTACCAAGGTAATTTA
CCTTTAGGCTATGATAAAGTACCTGACAGTAAAAAAGAGCTCATGATCAATCAACATGAAGCGAATATTGTTAAATATAT
TTTTGAGTCATACGCTAAAGGTCATGGTTATCGTAAGATTGCGAACGCATTGAATCATAAAGGTTATGTGACTAAGAAAG
CGAAACCTTTTAGCATTTCGTCCATTACTTACATCATCTCAAACCCTTTTTACATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAAAAACGAAAAGGACTCAATGAAGAACCAATCATTGCAGATGGTAAGCATGCGCCTATTATTGA
TAAAGCTTTACGGGATAAAGTACAGTTTAAACGCCAAGAGAGTCGCAAGAAACCACAAGTTCACGGTAAAGGGACTAACC
TACTGACTGGCATTGTAAAATGTCCGAAATGTGGTGCAGCAATGGCCGCAAGTAATACGACCAATACATTAAAAGATGGC
ACTAAGAAAAGAATCAGATATTACTCATGTAGTAATTTTAGAAACAAAGGTTCAAAAGTTTGTTCAGCCAATAGTGTTAG
AGCAGATGTACTAGAAAAATATGTTATGGATCAGATATTGGAAATTATCAAAAGCAAAAAGGTATTGAAGCAATTGGTTG
AAAAGGTAAATGAAAGAAGTCAAATAGACGTATCTTCTTTGAATCATGATATTGCCTATAAACAGTCACAATGTGAAGAA
ATAAAAGCCAAAATGCATACACTAACGAAAACTATCGAAGACTCCCCTGACTTAGATAGCGTATTGAAACCAACAATACT
TAGCTACCAAGATGAATTGAATCAAATAAATAATCAAATCCATCAACTAGAACAAGATAAACAAGCGGAATCTCCACATT
ATGATGCAGATATGATTGCTAATGTATTACAAGCAATATTCAAAGATATAGACAAATTAGAGAAATCTCAGTTGAAATCA
CTATATCTAACAATCATCGATCGTATTGACATAAGAAAAGATGAGCATCATAAGAAGCAATTTTACGTTACGCTCAAACT
GAATAATGAGATTATCAAACAACTATTTAATAACCATCCACTTGGGAGTGGGACAGAAATAATATTTTCTCAAAATTTAT
TTCGTTGTCCTACCCCAGCAAGGATGACTAGGTTTGAAAAAAGCTTGATTCAAGCGCATTTTCAAATCAGTCAGCTACTG
ACAAAATGA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(179-280)

Resolvase, N terminal domain (Resolvase)

(11-154)

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

69.573

95.907

0.667

Multiple sequence alignment