Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CSC56_RS04870 Genome accession   NZ_CP029652
Coordinates   897394..899379 (-) Length   661 a.a.
NCBI ID   WP_000229257.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0471     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 892394..904379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC56_RS04855 (CSC56_0882) lgt 892404..893243 (-) 840 WP_000513299.1 prolipoprotein diacylglyceryl transferase -
  CSC56_RS04860 (CSC56_0883) hprK 893249..894181 (-) 933 WP_000958224.1 HPr(Ser) kinase/phosphatase -
  CSC56_RS04865 (CSC56_0884) uvrA 894558..897386 (-) 2829 WP_000662699.1 excinuclease ABC subunit UvrA Machinery gene
  CSC56_RS04870 (CSC56_0885) uvrB 897394..899379 (-) 1986 WP_000229257.1 excinuclease ABC subunit UvrB Machinery gene
  CSC56_RS04875 (CSC56_0886) - 899648..899884 (-) 237 WP_000638419.1 CsbA family protein -
  CSC56_RS04880 (CSC56_0887) - 899881..900531 (-) 651 WP_000538142.1 YfbR-like 5'-deoxynucleotidase -
  CSC56_RS04885 (CSC56_0888) - 900705..901544 (-) 840 WP_000749393.1 CHAP domain-containing protein -
  CSC56_RS04895 - 903245..903338 (-) 94 Protein_892 hypothetical protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76694.38 Da        Isoelectric Point: 5.0538

>NTDB_id=255484 CSC56_RS04870 WP_000229257.1 897394..899379(-) (uvrB) [Staphylococcus aureus strain AR_0471]
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFK
EFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLV
VSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKER
EHFAIFPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPL
GSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGP
YEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDRGEVIMYADKMTD
SMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAK
DLDFEKATELRDMLFELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=255484 CSC56_RS04870 WP_000229257.1 897394..899379(-) (uvrB) [Staphylococcus aureus strain AR_0471]
ATGGTTGAACATTATCCTTTTAAAATACATTCTGATTTTGAGCCTCAAGGTGACCAACCGCAAGCAATTAAGGAAATCGT
GGAAGGTATTAAAGCGGGGAAAAGACATCAAACTTTATTAGGTGCAACTGGCACAGGGAAAACATTTACGATGAGTAATG
TTATTAAAGAAGTTGGGAAACCAACGTTAATTATCGCGCATAACAAAACATTAGCAGGACAATTATATAGTGAGTTTAAA
GAATTTTTTCCTGAAAACAGGGTGGAATACTTTGTAAGTTACTATGATTATTATCAACCTGAGGCATACGTACCGTCTAC
TGACACTTTTATTGAAAAAGATGCCTCAATCAATGATGAAATTGATCAACTACGACATTCTGCTACAAGTGCATTATTTG
AACGCGATGATGTAATTATTATTGCTAGTGTAAGTTGTATATATGGTTTAGGTAATCCAGAAGAATATAAAGATTTAGTA
GTAAGTGTTCGAGTTGGTATGGAAATGGATAGAAGTGAATTACTTAGAAAACTTGTAGATGTGCAATATACACGAAATGA
CATCGATTTCCAACGAGGAACGTTTCGAGTGCGTGGAGACGTCGTTGAAATATTCCCAGCCTCTAAGGAAGAACTATGTA
TACGAGTTGAGTTTTTTGGTGACGAAATCGATCGTATCCGAGAAGTTAATTATTTAACAGGTGAAGTGTTGAAAGAAAGG
GAACATTTTGCAATCTTCCCTGCATCTCACTTCGTCACACGTGAAGAAAAGATGAAAGTTGCGATTGAACGTATTGAAAA
AGAATTGGAAGAACGATTGAAAGAATTACGAGATGAGAATAAATTACTAGAAGCGCAAAGGTTAGAACAGCGTACCAATT
ATGATTTAGAAATGATGCGAGAGATGGGATTCTGTTCAGGAATTGAAAACTATTCCGTACATTTAACTTTGCGACCACTG
GGTTCGACACCATATACTTTATTGGATTACTTTGGCGATGATTGGTTAGTAATGATTGATGAATCACATGTGACATTACC
GCAAGTTCGAGGCATGTATAATGGAGACAGAGCGCGTAAACAAGTTTTGGTGGATCATGGATTTAGATTACCGAGTGCGT
TAGATAACCGCCCACTTAAATTTGAAGAATTTGAAGAAAAGACAAAACAACTTGTTTATGTATCTGCAACGCCTGGTCCA
TACGAAATTGAACATACGGATAAGATGGTTGAACAAATTATTCGTCCTACTGGTTTACTGGATCCTAAGATTGAGGTTAG
ACCTACTGAAAATCAAATTGATGATTTATTAAGTGAAATTCAAACAAGGGTTGAGCGTAATGAACGCGTACTTGTTACAA
CGCTCACTAAAAAGATGAGTGAAGATTTAACCACATACATGAAAGAAGCAGGCATTAAAGTTAATTATCTGCATTCAGAA
ATCAAGACATTAGAACGAATTGAAATTATAAGAGATTTACGTATGGGTACGTATGATGTCATTGTAGGGATTAATTTATT
AAGAGAGGGTATTGATATTCCAGAAGTGTCTTTAGTTGTGATATTAGATGCAGATAAAGAAGGATTTTTACGTTCAAATC
GTTCATTAATACAAACAATAGGTAGAGCCGCACGTAATGATCGAGGCGAAGTGATTATGTATGCTGATAAAATGACTGAT
TCAATGAAGTATGCTATTGACGAAACGCAACGTCGTCGAGAAATTCAAATGAAACACAATGAAAAACACGGTATTACACC
TAAAACAATTAATAAAAAAATACATGATTTAATTAGTGCTACTGTTGAAAATGACGAAAATAATGACAAAGCACAAACTG
TGATACCTAAGAAGATGACGAAAAAAGAACGTCAAAAGACAATCGACAATATAGAAAAAGAAATGAAACAAGCAGCGAAA
GATTTAGATTTCGAGAAAGCTACAGAATTAAGAGATATGTTATTTGAATTAAAAGCAGAAGGGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(434-546)

Type III restriction enzyme, res subunit (ResIII)

(14-140)

UvrB/uvrC motif (UVR)

(626-659)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(161-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

67.688

98.79

0.669
  uvrB Streptococcus pneumoniae TIGR4

67.688

98.79

0.669
  uvrB Streptococcus pneumoniae D39

67.688

98.79

0.669

Multiple sequence alignment