Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CSC56_RS02290 Genome accession   NZ_CP029652
Coordinates   421561..422334 (-) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0471     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 416561..427334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC56_RS02255 (CSC56_0392) - 416815..417585 (-) 771 WP_000473705.1 isoprenyl transferase -
  CSC56_RS02260 (CSC56_0393) frr 417957..418511 (-) 555 WP_001280003.1 ribosome recycling factor -
  CSC56_RS02265 (CSC56_0394) pyrH 418530..419252 (-) 723 WP_000057330.1 UMP kinase -
  CSC56_RS02270 (CSC56_0395) tsf 419389..420270 (-) 882 WP_000201387.1 translation elongation factor Ts -
  CSC56_RS02275 - 420305..420418 (-) 114 WP_001789890.1 hypothetical protein -
  CSC56_RS02280 (CSC56_0396) rpsB 420452..421219 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  CSC56_RS02285 - 421418..421510 (-) 93 WP_031785459.1 hypothetical protein -
  CSC56_RS02290 (CSC56_0397) codY 421561..422334 (-) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CSC56_RS02295 (CSC56_0398) hslU 422359..423762 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  CSC56_RS02300 (CSC56_0399) hslV 423828..424373 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CSC56_RS02305 (CSC56_0400) xerC 424370..425266 (-) 897 WP_001015604.1 tyrosine recombinase XerC -
  CSC56_RS02310 (CSC56_0401) trmFO 425684..426991 (-) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=255465 CSC56_RS02290 WP_000055334.1 421561..422334(-) (codY) [Staphylococcus aureus strain AR_0471]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=255465 CSC56_RS02290 WP_000055334.1 421561..422334(-) (codY) [Staphylococcus aureus strain AR_0471]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment