Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CSC56_RS00815 Genome accession   NZ_CP029652
Coordinates   98310..99989 (+) Length   559 a.a.
NCBI ID   WP_054194577.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0471     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 93310..104989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC56_RS00785 (CSC56_0108) - 94164..94526 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  CSC56_RS00790 (CSC56_0109) nusB 94586..94975 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  CSC56_RS00795 (CSC56_0110) xseA 94992..96329 (+) 1338 WP_001286934.1 exodeoxyribonuclease VII large subunit -
  CSC56_RS00800 (CSC56_0111) - 96322..96552 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  CSC56_RS00805 (CSC56_0112) - 96530..97411 (+) 882 WP_000183379.1 polyprenyl synthetase family protein -
  CSC56_RS00810 (CSC56_0113) argR 97842..98294 (+) 453 WP_001124985.1 transcriptional regulator ArgR -
  CSC56_RS00815 (CSC56_0114) recN 98310..99989 (+) 1680 WP_054194577.1 DNA repair protein RecN Machinery gene
  CSC56_RS00820 (CSC56_0115) lpdA 100140..101561 (+) 1422 WP_001291530.1 dihydrolipoyl dehydrogenase -
  CSC56_RS00825 (CSC56_0116) - 101577..102569 (+) 993 WP_000568356.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  CSC56_RS00830 (CSC56_0117) - 102569..103552 (+) 984 WP_001096632.1 alpha-ketoacid dehydrogenase subunit beta -
  CSC56_RS00835 (CSC56_0118) - 103565..104839 (+) 1275 WP_000406833.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64259.93 Da        Isoelectric Point: 4.7972

>NTDB_id=255452 CSC56_RS00815 WP_054194577.1 98310..99989(+) (recN) [Staphylococcus aureus strain AR_0471]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMLELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIERLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRHR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=255452 CSC56_RS00815 WP_054194577.1 98310..99989(+) (recN) [Staphylococcus aureus strain AR_0471]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCTAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCGACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATTGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGAGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGCATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGTGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44

Multiple sequence alignment