Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CUU60_RS12585 Genome accession   NZ_CP024795
Coordinates   2734086..2735039 (-) Length   317 a.a.
NCBI ID   WP_019688644.1    Uniprot ID   A0A378Y424
Organism   Paenibacillus polymyxa ATCC 842     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2729086..2740039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUU60_RS12560 (CUU60_12495) - 2729555..2730466 (-) 912 WP_019688639.1 aldo/keto reductase -
  CUU60_RS12565 (CUU60_12500) - 2730625..2731368 (-) 744 WP_019688640.1 alpha/beta hydrolase -
  CUU60_RS12570 (CUU60_12505) - 2731401..2732381 (-) 981 WP_019688641.1 siderophore ABC transporter substrate-binding protein -
  CUU60_RS12575 (CUU60_12510) - 2732394..2733152 (-) 759 WP_019688642.1 ABC transporter ATP-binding protein -
  CUU60_RS12580 (CUU60_12515) - 2733146..2734096 (-) 951 WP_019688643.1 iron chelate uptake ABC transporter family permease subunit -
  CUU60_RS12585 (CUU60_12520) ceuB 2734086..2735039 (-) 954 WP_019688644.1 ABC transporter permease Machinery gene
  CUU60_RS12590 (CUU60_12525) - 2735364..2736041 (+) 678 WP_019688645.1 response regulator transcription factor -
  CUU60_RS12595 (CUU60_12530) - 2736042..2736959 (+) 918 WP_019688646.1 sensor histidine kinase KdpD -
  CUU60_RS12600 (CUU60_12535) - 2737067..2737744 (+) 678 WP_017425557.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34704.67 Da        Isoelectric Point: 9.9012

>NTDB_id=255445 CUU60_RS12585 WP_019688644.1 2734086..2735039(-) (ceuB) [Paenibacillus polymyxa ATCC 842]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=255445 CUU60_RS12585 WP_019688644.1 2734086..2735039(-) (ceuB) [Paenibacillus polymyxa ATCC 842]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTATTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTAGGCG
TACATTACAAGCGCACTGTCAATGTTGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACG
ATTCCCTTTTTAGGACTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378Y424

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498

Multiple sequence alignment