Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   COO91_RS11695 Genome accession   NZ_CP024785
Coordinates   2545945..2547471 (-) Length   508 a.a.
NCBI ID   WP_100898635.1    Uniprot ID   A0A2K8SMT9
Organism   Nostoc flagelliforme CCNUN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2540945..2552471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO91_RS11665 (COO91_02714) - 2541464..2542714 (-) 1251 WP_100898631.1 serine/threonine-protein kinase -
  COO91_RS11670 (COO91_02715) - 2543434..2544258 (-) 825 WP_100898632.1 Uma2 family endonuclease -
  COO91_RS11675 (COO91_02716) - 2544288..2544527 (-) 240 WP_100898633.1 DUF2283 domain-containing protein -
  COO91_RS53190 (COO91_02717) - 2544596..2544808 (-) 213 WP_225912526.1 hypothetical protein -
  COO91_RS11690 (COO91_02718) - 2545074..2545802 (-) 729 WP_208766703.1 Uma2 family endonuclease -
  COO91_RS11695 (COO91_02719) radA 2545945..2547471 (-) 1527 WP_100898635.1 DNA repair protein RadA Machinery gene
  COO91_RS11700 (COO91_02720) rpaB 2547642..2548370 (+) 729 WP_100898636.1 response regulator transcription factor RpaB -
  COO91_RS52170 (COO91_02721) - 2548375..2548506 (+) 132 WP_208766704.1 histidine kinase -
  COO91_RS11705 (COO91_02722) - 2548513..2549151 (+) 639 WP_100898637.1 cofactor assembly of complex C subunit B -
  COO91_RS11710 (COO91_02723) - 2549246..2550166 (-) 921 WP_100898638.1 M48 family metallopeptidase -
  COO91_RS11720 (COO91_02725) - 2550526..2551044 (+) 519 WP_100898640.1 DUF456 domain-containing protein -
  COO91_RS11725 (COO91_02726) - 2551597..2552208 (+) 612 WP_100898641.1 PEP-CTERM sorting domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54435.29 Da        Isoelectric Point: 4.9223

>NTDB_id=255414 COO91_RS11695 WP_100898635.1 2545945..2547471(-) (radA) [Nostoc flagelliforme CCNUN1]
MAKAKTFFVCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSGWQSTQTNGKSHAKPAKARASLTFNQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKSV
NVVNDENPIVVVDATLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVADGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTADDLEPDEEE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=255414 COO91_RS11695 WP_100898635.1 2545945..2547471(-) (radA) [Nostoc flagelliforme CCNUN1]
ATGGCAAAGGCAAAAACCTTTTTTGTGTGTAATGAATGTGGAGCAGAATCGCCCCAATGGTTTGGTAAATGTCCTGCTTG
TGGCACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCCTCAGTAGATGTACCCAGTCGGGGGGGAGTGAGTGGTT
GGCAATCAACTCAAACTAATGGTAAATCTCACGCTAAACCAGCTAAAGCGCGAGCCTCTTTAACATTTAACCAAATTACC
GATCGCCAAATTGCCCGGTGGGAGTCTGGTTATGGAGAATTGGATCGAGTGCTTGGGGGCGGGGTTGTCCCTGGCTCTAT
GGTGTTGATTGGCGGCGATCCGGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCAAATCAATTAGCACAGAAATATC
GCATCCTTTACGTAACTGGTGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCTCGTTTGGGAGTATCAAAAAGCGTA
AATGTGGTTAATGATGAAAATCCCATTGTGGTAGTAGATGCGACACTTCCCATAGACCCTGACAGTATAGGTGCAGATTT
ATATGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGACTCTCTAAAGCCAAACGTGGCGGTGATTGATA
GTATCCAAACGGTGTTTTTTCCAGCACTGACTTCTGCACCAGGTTCGGTAGCTCAGGTACGGGAATGTACAGCAGCATTG
ATGAAGGTAGCGAAGCACGAAGATGTCACTATGCTGATTGTGGGACACGTTACCAAAGAAGGAGCGATCGCAGGGCCAAA
AGTTTTAGAACATTTAGTGGATACTGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGGTTATTACGGACAGTCA
AAAACCGTTTTGGTGCAACTCACGAAATCGGCATCTTTGAAATGGTGGCAGATGGATTGCGAGAAGTCTCCAACCCCTCA
GAGCTATTTTTAGGCAACCGTGACGATCCTGCACCTGGTACTGCCATTGTCGTTGCTTGCGAAGGCACTCGTCCGATAGT
TGTGGAATTGCAAGCTTTGGTGAGTCCCACCAGCTATCCCTCACCCCGTCGTGCTGGTACTGGCGTAGATTACAACCGCT
TGGTGCAAATTCTTGCCGTCTTAGAAAAACGGGTGGGAATTCCCATGTCGAAATTGGATTCCTATGTTGCTTCTGCGGGT
GGGTTGAATGTGGAAGAACCTGCGGTAGATTTGGGAATTGCGATCGCGATCGTTGCCAGTTTCCGTGATCGCATAGTTGA
TCCCGGTACAGTATTAATCGGTGAAGTTGGGCTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTGAAAG
AAGCTGCTAAGTTGGGATTTAAACGAGCGATCGTGCCAAAAGGAACAAAATTTCCCGACTTGAATATTGAGATATTACCA
GTATCTAAAGTAATAGATGCAATTATCGCTGCTATTCCGCATCAGGAATTGACAGCAGACGATTTAGAACCTGATGAAGA
AGAGTAA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(90-296)

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8SMT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.507

97.047

0.49
  radA Streptococcus mitis SK321

46.232

96.654

0.447
  radA Streptococcus mitis NCTC 12261

47.761

92.323

0.441
  radA Streptococcus pneumoniae Rx1

47.761

92.323

0.441
  radA Streptococcus pneumoniae D39

47.761

92.323

0.441
  radA Streptococcus pneumoniae R6

47.761

92.323

0.441
  radA Streptococcus pneumoniae TIGR4

47.761

92.323

0.441

Multiple sequence alignment