Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CTV95_RS12400 Genome accession   NZ_CP024780
Coordinates   2752737..2754119 (+) Length   460 a.a.
NCBI ID   WP_014914021.1    Uniprot ID   A0A3S0ZXC5
Organism   Pectobacterium brasiliense strain BZA12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2747737..2759119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTV95_RS12380 (CTV95_12380) prfC 2748041..2749630 (-) 1590 WP_014914025.1 peptide chain release factor 3 -
  CTV95_RS12385 (CTV95_12385) - 2749922..2750839 (+) 918 WP_100017651.1 hypothetical protein -
  CTV95_RS12390 (CTV95_12390) - 2750888..2751586 (-) 699 WP_100017652.1 YtjB family periplasmic protein -
  CTV95_RS12395 (CTV95_12395) serB 2751742..2752719 (+) 978 WP_100017653.1 phosphoserine phosphatase -
  CTV95_RS12400 (CTV95_12400) radA 2752737..2754119 (+) 1383 WP_014914021.1 DNA repair protein RadA Machinery gene
  CTV95_RS12405 (CTV95_12405) nadR 2754238..2755491 (+) 1254 WP_100017654.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  CTV95_RS12410 (CTV95_12410) - 2755488..2756135 (-) 648 WP_100017655.1 5-formyltetrahydrofolate cyclo-ligase -
  CTV95_RS12420 (CTV95_12420) zapA 2756433..2756762 (-) 330 WP_010284667.1 cell division protein ZapA -
  CTV95_RS12425 (CTV95_12425) - 2756955..2757542 (+) 588 WP_039279401.1 YecA family protein -
  CTV95_RS12430 (CTV95_12430) pepP 2757600..2758925 (+) 1326 WP_014914017.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49620.19 Da        Isoelectric Point: 7.4218

>NTDB_id=255395 CTV95_RS12400 WP_014914021.1 2752737..2754119(+) (radA) [Pectobacterium brasiliense strain BZA12]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASTSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKVPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=255395 CTV95_RS12400 WP_014914021.1 2752737..2754119(+) (radA) [Pectobacterium brasiliense strain BZA12]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTCCGTCTGGCCTCGGCGTCAACATCACGTTCCGACCGTCTCACCGGCTATG
CGGGCGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCCACCGGT
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTCCCCGGCAGTGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCTTACTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGTGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCGCATCGTCTCAACCTGCCGACCCAAAATCTCAATATGCTGTCAGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTGATGCATCTCGCGGATAT
TCAATCGTCACCCGGTAGCGTAGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACACGCGGCGTCG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCACTCGCCGGACCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAGGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTCCTCAGTCGCGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGTACGCGTCCGCTGCTGGTCGAGATTCAGGCGCTGGTGGATCAA
TCGATGATGGCCAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAATCGCCTGGCGATCCTGCTGGCGGTATTACATCG
CCATGGCGGCTTGCAGATGTCCGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTGCTATCGCTGGTTTCCAGCTTCCGTGACCGCCCACTGCCGCAGGATCTTGTCATCTTCGGTGAAGTC
GGTCTGGCGGGTGAAATCCGCCCGGTTCCCAGCGGCCAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGTCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0ZXC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment