Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | CUC43_RS17250 | Genome accession | NZ_CP024771 |
| Coordinates | 3187470..3187751 (+) | Length | 93 a.a. |
| NCBI ID | WP_023523669.1 | Uniprot ID | A0A9X7CHD1 |
| Organism | Bacillus thuringiensis LM1212 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3147419..3188337 | 3187470..3187751 | within | 0 |
Gene organization within MGE regions
Location: 3147419..3188337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC43_RS16985 (CUC43_17560) | - | 3147419..3148528 (-) | 1110 | WP_029437994.1 | tyrosine-type recombinase/integrase | - |
| CUC43_RS16990 (CUC43_17565) | - | 3148954..3149298 (-) | 345 | WP_029437995.1 | helix-turn-helix transcriptional regulator | - |
| CUC43_RS16995 (CUC43_17570) | - | 3149823..3150962 (+) | 1140 | WP_029437996.1 | AimR family lysis-lysogeny pheromone receptor | - |
| CUC43_RS33765 | - | 3150966..3151103 (+) | 138 | WP_162901155.1 | hypothetical protein | - |
| CUC43_RS33770 | - | 3151253..3151405 (+) | 153 | WP_155417052.1 | hypothetical protein | - |
| CUC43_RS17000 (CUC43_17575) | - | 3151412..3151759 (-) | 348 | WP_029437997.1 | helix-turn-helix transcriptional regulator | - |
| CUC43_RS17005 (CUC43_17580) | - | 3151935..3152153 (+) | 219 | WP_033694466.1 | helix-turn-helix transcriptional regulator | - |
| CUC43_RS17010 (CUC43_17585) | - | 3152212..3152886 (+) | 675 | WP_029437999.1 | Rha family transcriptional regulator | - |
| CUC43_RS17015 (CUC43_17590) | - | 3152924..3153199 (+) | 276 | WP_029438000.1 | helix-turn-helix domain-containing protein | - |
| CUC43_RS33775 (CUC43_17595) | - | 3153235..3153399 (+) | 165 | WP_033694467.1 | hypothetical protein | - |
| CUC43_RS33780 (CUC43_17600) | - | 3153429..3153605 (+) | 177 | WP_033694468.1 | hypothetical protein | - |
| CUC43_RS17020 (CUC43_17605) | - | 3153610..3154359 (+) | 750 | WP_029438001.1 | DnaD domain protein | - |
| CUC43_RS17025 (CUC43_17610) | - | 3154298..3155173 (+) | 876 | WP_029438002.1 | ATP-binding protein | - |
| CUC43_RS17030 (CUC43_17615) | - | 3155189..3155383 (+) | 195 | WP_029438003.1 | hypothetical protein | - |
| CUC43_RS17035 (CUC43_17620) | - | 3155409..3155582 (+) | 174 | WP_000805170.1 | DUF3954 domain-containing protein | - |
| CUC43_RS17040 (CUC43_17625) | - | 3155597..3155851 (+) | 255 | WP_029438004.1 | hypothetical protein | - |
| CUC43_RS17045 (CUC43_17630) | - | 3155860..3156323 (+) | 464 | Protein_3237 | nucleoside permease | - |
| CUC43_RS17050 (CUC43_17635) | - | 3156351..3156542 (+) | 192 | WP_029438005.1 | hypothetical protein | - |
| CUC43_RS17055 (CUC43_17640) | - | 3156601..3156819 (+) | 219 | WP_029438006.1 | hypothetical protein | - |
| CUC43_RS17060 (CUC43_17645) | - | 3156996..3158225 (-) | 1230 | WP_029438007.1 | IS110 family transposase | - |
| CUC43_RS17065 (CUC43_17650) | - | 3158596..3159171 (+) | 576 | WP_029438008.1 | hypothetical protein | - |
| CUC43_RS17070 (CUC43_17655) | - | 3159216..3159461 (+) | 246 | WP_029438009.1 | hypothetical protein | - |
| CUC43_RS17075 (CUC43_17660) | - | 3159512..3159703 (+) | 192 | WP_000220910.1 | hypothetical protein | - |
| CUC43_RS17080 (CUC43_17665) | - | 3159745..3160047 (+) | 303 | WP_029438010.1 | hypothetical protein | - |
| CUC43_RS17085 (CUC43_17670) | - | 3160111..3160209 (+) | 99 | WP_118991858.1 | DUF3983 domain-containing protein | - |
| CUC43_RS17090 (CUC43_17675) | - | 3160230..3160412 (+) | 183 | WP_029438011.1 | hypothetical protein | - |
| CUC43_RS17095 (CUC43_17680) | - | 3160598..3161791 (-) | 1194 | WP_029437265.1 | IS110 family transposase | - |
| CUC43_RS33785 (CUC43_17690) | - | 3162087..3162257 (+) | 171 | WP_000866511.1 | hypothetical protein | - |
| CUC43_RS17105 (CUC43_17695) | - | 3162281..3162751 (+) | 471 | WP_029438012.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| CUC43_RS17110 (CUC43_17700) | - | 3162748..3163290 (+) | 543 | WP_001028518.1 | tyrosine-type recombinase/integrase | - |
| CUC43_RS17115 (CUC43_17705) | - | 3163894..3164106 (+) | 213 | WP_029437241.1 | DNA translocase FtsK | - |
| CUC43_RS34300 | - | 3164149..3164541 (+) | 393 | WP_029437242.1 | hypothetical protein | - |
| CUC43_RS17125 (CUC43_17715) | - | 3164555..3164872 (+) | 318 | WP_029437243.1 | hypothetical protein | - |
| CUC43_RS17130 (CUC43_17720) | - | 3164874..3165215 (+) | 342 | WP_029437244.1 | hypothetical protein | - |
| CUC43_RS17135 (CUC43_17725) | - | 3165226..3165537 (+) | 312 | WP_029437245.1 | HNH endonuclease signature motif containing protein | - |
| CUC43_RS17140 (CUC43_17730) | - | 3165541..3165840 (+) | 300 | WP_029437246.1 | hypothetical protein | - |
| CUC43_RS17145 (CUC43_17735) | - | 3165947..3166267 (+) | 321 | WP_029440482.1 | P27 family phage terminase small subunit | - |
| CUC43_RS17150 (CUC43_17740) | - | 3166251..3167933 (+) | 1683 | WP_118991719.1 | terminase TerL endonuclease subunit | - |
| CUC43_RS17155 (CUC43_17745) | - | 3167948..3169105 (+) | 1158 | WP_118991720.1 | phage portal protein | - |
| CUC43_RS17160 (CUC43_17750) | - | 3169202..3170320 (+) | 1119 | WP_029437250.1 | IS110 family transposase | - |
| CUC43_RS17165 (CUC43_17755) | - | 3170671..3171390 (+) | 720 | WP_118991721.1 | head maturation protease, ClpP-related | - |
| CUC43_RS17170 (CUC43_17760) | - | 3171432..3172595 (+) | 1164 | WP_029440480.1 | phage major capsid protein | - |
| CUC43_RS17175 (CUC43_17765) | - | 3172610..3172834 (+) | 225 | WP_029440479.1 | hypothetical protein | - |
| CUC43_RS17180 (CUC43_17770) | - | 3172844..3173143 (+) | 300 | WP_029440478.1 | hypothetical protein | - |
| CUC43_RS17185 (CUC43_17775) | - | 3173124..3173522 (+) | 399 | WP_029440477.1 | hypothetical protein | - |
| CUC43_RS17190 (CUC43_17780) | - | 3173473..3173874 (+) | 402 | WP_029440476.1 | hypothetical protein | - |
| CUC43_RS17195 (CUC43_17785) | - | 3173861..3174289 (+) | 429 | WP_029440475.1 | hypothetical protein | - |
| CUC43_RS17200 (CUC43_17790) | - | 3174290..3174877 (+) | 588 | WP_029440474.1 | hypothetical protein | - |
| CUC43_RS17205 (CUC43_17795) | - | 3174951..3175412 (+) | 462 | WP_029440473.1 | hypothetical protein | - |
| CUC43_RS17210 (CUC43_17800) | - | 3175591..3177423 (+) | 1833 | WP_029440472.1 | hypothetical protein | - |
| CUC43_RS17215 (CUC43_17805) | - | 3177641..3178879 (+) | 1239 | Protein_3271 | hypothetical protein | - |
| CUC43_RS17220 (CUC43_17810) | - | 3178998..3180401 (-) | 1404 | WP_118991722.1 | IS66 family transposase | - |
| CUC43_RS17225 (CUC43_17815) | - | 3180692..3181204 (+) | 513 | WP_240441721.1 | toprim domain-containing protein | - |
| CUC43_RS17230 (CUC43_17820) | ltrA | 3181904..3183781 (+) | 1878 | WP_029437180.1 | group II intron reverse transcriptase/maturase | - |
| CUC43_RS17235 (CUC43_17825) | - | 3183913..3185547 (+) | 1635 | WP_118991723.1 | type IA DNA topoisomerase | - |
| CUC43_RS17240 (CUC43_17830) | - | 3186084..3186857 (+) | 774 | WP_029437179.1 | hypothetical protein | - |
| CUC43_RS17245 (CUC43_17835) | - | 3187163..3187348 (-) | 186 | WP_029437178.1 | aspartyl-phosphate phosphatase Spo0E family protein | - |
| CUC43_RS17250 (CUC43_17840) | abrB | 3187470..3187751 (+) | 282 | WP_023523669.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| CUC43_RS17255 (CUC43_17845) | hfq | 3187773..3188006 (+) | 234 | WP_029437177.1 | RNA chaperone Hfq | - |
| CUC43_RS17260 (CUC43_17850) | - | 3188059..3188337 (-) | 279 | WP_029437176.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 10399.09 Da Isoelectric Point: 7.9925
>NTDB_id=255378 CUC43_RS17250 WP_023523669.1 3187470..3187751(+) (abrB) [Bacillus thuringiensis LM1212]
MKSTGIVRKIDELGRVVIPKETRRTLNIHEKDPLEIFVEGETIVLQKYKSYGTCPITGEISSQNIKLADGKLTLSPEGAK
QLLAELEQYKVTV
MKSTGIVRKIDELGRVVIPKETRRTLNIHEKDPLEIFVEGETIVLQKYKSYGTCPITGEISSQNIKLADGKLTLSPEGAK
QLLAELEQYKVTV
Nucleotide
Download Length: 282 bp
>NTDB_id=255378 CUC43_RS17250 WP_023523669.1 3187470..3187751(+) (abrB) [Bacillus thuringiensis LM1212]
ATGAAATCAACAGGTATTGTACGAAAAATCGATGAGCTTGGTCGAGTTGTGATACCGAAGGAAACGAGACGTACACTCAA
CATTCACGAAAAAGACCCACTAGAAATATTTGTAGAAGGCGAAACGATTGTTCTACAGAAATATAAATCGTATGGTACTT
GTCCCATCACAGGAGAGATTTCTTCCCAGAATATCAAACTAGCGGATGGAAAGCTGACGTTGAGCCCAGAAGGGGCGAAA
CAACTATTAGCTGAATTAGAACAATACAAAGTAACGGTATGA
ATGAAATCAACAGGTATTGTACGAAAAATCGATGAGCTTGGTCGAGTTGTGATACCGAAGGAAACGAGACGTACACTCAA
CATTCACGAAAAAGACCCACTAGAAATATTTGTAGAAGGCGAAACGATTGTTCTACAGAAATATAAATCGTATGGTACTT
GTCCCATCACAGGAGAGATTTCTTCCCAGAATATCAAACTAGCGGATGGAAAGCTGACGTTGAGCCCAGAAGGGGCGAAA
CAACTATTAGCTGAATTAGAACAATACAAAGTAACGGTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
64.773 |
94.624 |
0.613 |