Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CUC43_RS16325 Genome accession   NZ_CP024771
Coordinates   3027102..3027425 (-) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus thuringiensis LM1212     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022102..3032425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC43_RS16300 (CUC43_16830) - 3022351..3023637 (+) 1287 WP_029437916.1 D-alanyl-D-alanine carboxypeptidase family protein -
  CUC43_RS16305 (CUC43_16835) - 3023831..3024400 (+) 570 WP_000767817.1 signal peptidase I -
  CUC43_RS16310 (CUC43_16840) - 3024463..3025050 (+) 588 WP_000172849.1 CalY family protein -
  CUC43_RS16315 (CUC43_16845) - 3025212..3026018 (+) 807 WP_029437917.1 DUF4047 domain-containing protein -
  CUC43_RS16320 (CUC43_16850) calY 3026433..3027026 (+) 594 WP_000053730.1 biofilm matrix protein CalY -
  CUC43_RS16325 (CUC43_16855) sinR 3027102..3027425 (-) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  CUC43_RS16330 (CUC43_16860) - 3027505..3027639 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  CUC43_RS16335 (CUC43_16865) inhA1 3027983..3030370 (+) 2388 WP_029437918.1 M6 family metalloprotease immune inhibitor InhA1 -
  CUC43_RS16340 (CUC43_16870) - 3030543..3031910 (+) 1368 WP_029437919.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=255377 CUC43_RS16325 WP_000578880.1 3027102..3027425(-) (sinR) [Bacillus thuringiensis LM1212]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=255377 CUC43_RS16325 WP_000578880.1 3027102..3027425(-) (sinR) [Bacillus thuringiensis LM1212]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment