Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | CUC43_RS11005 | Genome accession | NZ_CP024771 |
| Coordinates | 2012271..2012549 (+) | Length | 92 a.a. |
| NCBI ID | WP_029437228.1 | Uniprot ID | - |
| Organism | Bacillus thuringiensis LM1212 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2004038..2042884 | 2012271..2012549 | within | 0 |
Gene organization within MGE regions
Location: 2004038..2042884
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC43_RS10950 (CUC43_11290) | - | 2004038..2005162 (-) | 1125 | WP_029437219.1 | tyrosine-type recombinase/integrase | - |
| CUC43_RS10960 (CUC43_11300) | - | 2005438..2005782 (-) | 345 | WP_029437220.1 | helix-turn-helix transcriptional regulator | - |
| CUC43_RS10965 (CUC43_11305) | - | 2006273..2007424 (+) | 1152 | WP_118991685.1 | AimR family lysis-lysogeny pheromone receptor | - |
| CUC43_RS33640 | - | 2007460..2007615 (+) | 156 | WP_162901148.1 | hypothetical protein | - |
| CUC43_RS33645 | - | 2007764..2007901 (+) | 138 | WP_162901149.1 | hypothetical protein | - |
| CUC43_RS10970 (CUC43_11310) | - | 2007931..2008290 (-) | 360 | WP_029437221.1 | helix-turn-helix transcriptional regulator | - |
| CUC43_RS10975 (CUC43_11315) | - | 2008461..2008664 (+) | 204 | WP_033694430.1 | helix-turn-helix transcriptional regulator | - |
| CUC43_RS10980 (CUC43_11320) | - | 2008731..2009462 (+) | 732 | WP_029437223.1 | ORF6C domain-containing protein | - |
| CUC43_RS10985 (CUC43_11325) | - | 2009506..2009856 (+) | 351 | WP_029437224.1 | helix-turn-helix domain-containing protein | - |
| CUC43_RS33650 (CUC43_11330) | - | 2009853..2010020 (+) | 168 | WP_158001545.1 | hypothetical protein | - |
| CUC43_RS33655 (CUC43_11335) | - | 2010050..2010226 (+) | 177 | WP_033694431.1 | hypothetical protein | - |
| CUC43_RS10990 (CUC43_11340) | - | 2010231..2011118 (+) | 888 | WP_029437225.1 | conserved phage C-terminal domain-containing protein | - |
| CUC43_RS10995 (CUC43_11345) | - | 2011133..2012047 (+) | 915 | WP_029437226.1 | AAA family ATPase | - |
| CUC43_RS11000 (CUC43_11350) | - | 2012060..2012254 (+) | 195 | WP_029437227.1 | hypothetical protein | - |
| CUC43_RS11005 (CUC43_11355) | abrB | 2012271..2012549 (+) | 279 | WP_029437228.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| CUC43_RS11010 (CUC43_11360) | - | 2012542..2012901 (+) | 360 | WP_001125952.1 | hypothetical protein | - |
| CUC43_RS11015 (CUC43_11365) | - | 2012920..2013087 (+) | 168 | WP_000717826.1 | DUF3954 domain-containing protein | - |
| CUC43_RS11020 (CUC43_11370) | - | 2013113..2013364 (+) | 252 | WP_029437229.1 | hypothetical protein | - |
| CUC43_RS11025 (CUC43_11375) | - | 2013384..2013866 (+) | 483 | WP_029437230.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| CUC43_RS11030 (CUC43_11380) | - | 2013905..2014144 (+) | 240 | WP_029437231.1 | hypothetical protein | - |
| CUC43_RS33660 | - | 2014158..2014331 (+) | 174 | WP_158001546.1 | hypothetical protein | - |
| CUC43_RS11035 (CUC43_11385) | - | 2014365..2014697 (+) | 333 | WP_029437232.1 | hypothetical protein | - |
| CUC43_RS11040 (CUC43_11390) | - | 2014725..2015420 (+) | 696 | WP_029437233.1 | hypothetical protein | - |
| CUC43_RS11045 (CUC43_11395) | - | 2015638..2015817 (+) | 180 | WP_029437234.1 | hypothetical protein | - |
| CUC43_RS11050 (CUC43_11400) | - | 2015856..2016038 (+) | 183 | WP_029437235.1 | hypothetical protein | - |
| CUC43_RS11055 (CUC43_11405) | - | 2016075..2016311 (+) | 237 | WP_029437236.1 | hypothetical protein | - |
| CUC43_RS11060 (CUC43_11410) | - | 2016571..2016753 (+) | 183 | WP_029437237.1 | hypothetical protein | - |
| CUC43_RS11065 (CUC43_11415) | - | 2016734..2016964 (+) | 231 | WP_240441741.1 | hypothetical protein | - |
| CUC43_RS11070 (CUC43_11420) | - | 2016975..2017097 (+) | 123 | WP_033694432.1 | DUF3983 domain-containing protein | - |
| CUC43_RS11075 (CUC43_11425) | - | 2017118..2017300 (+) | 183 | WP_029437238.1 | hypothetical protein | - |
| CUC43_RS33665 (CUC43_11430) | - | 2017405..2017575 (+) | 171 | WP_000866511.1 | hypothetical protein | - |
| CUC43_RS11080 (CUC43_11435) | - | 2017596..2018072 (+) | 477 | WP_029437239.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| CUC43_RS11085 (CUC43_11440) | - | 2018069..2018611 (+) | 543 | WP_029437240.1 | site-specific integrase | - |
| CUC43_RS11090 (CUC43_11445) | - | 2019215..2019427 (+) | 213 | WP_029437241.1 | DNA translocase FtsK | - |
| CUC43_RS34220 | - | 2019470..2019862 (+) | 393 | WP_029437242.1 | hypothetical protein | - |
| CUC43_RS11100 (CUC43_11455) | - | 2019876..2020193 (+) | 318 | WP_029437243.1 | hypothetical protein | - |
| CUC43_RS11105 (CUC43_11460) | - | 2020195..2020536 (+) | 342 | WP_029437244.1 | hypothetical protein | - |
| CUC43_RS11110 (CUC43_11465) | - | 2020547..2020858 (+) | 312 | WP_029437245.1 | HNH endonuclease signature motif containing protein | - |
| CUC43_RS11115 (CUC43_11470) | - | 2020862..2021161 (+) | 300 | WP_029437246.1 | hypothetical protein | - |
| CUC43_RS11120 (CUC43_11475) | - | 2021268..2021591 (+) | 324 | WP_029437247.1 | P27 family phage terminase small subunit | - |
| CUC43_RS11125 (CUC43_11480) | - | 2021572..2023245 (+) | 1674 | WP_029437248.1 | terminase TerL endonuclease subunit | - |
| CUC43_RS11130 (CUC43_11485) | - | 2023262..2024425 (+) | 1164 | WP_029437249.1 | phage portal protein | - |
| CUC43_RS11135 (CUC43_11490) | - | 2024522..2025640 (+) | 1119 | WP_029437250.1 | IS110 family transposase | - |
| CUC43_RS11140 (CUC43_11495) | - | 2025991..2026734 (+) | 744 | WP_033694433.1 | head maturation protease, ClpP-related | - |
| CUC43_RS11145 (CUC43_11500) | - | 2026772..2027914 (+) | 1143 | WP_029437251.1 | phage major capsid protein | - |
| CUC43_RS11150 (CUC43_11505) | - | 2028076..2028381 (+) | 306 | WP_000438401.1 | head-tail connector protein | - |
| CUC43_RS11155 (CUC43_11510) | - | 2028365..2028712 (+) | 348 | WP_029437252.1 | hypothetical protein | - |
| CUC43_RS11160 (CUC43_11515) | - | 2028702..2029088 (+) | 387 | WP_029437253.1 | hypothetical protein | - |
| CUC43_RS11165 (CUC43_11520) | - | 2029078..2029500 (+) | 423 | WP_029437254.1 | hypothetical protein | - |
| CUC43_RS11170 (CUC43_11525) | - | 2029507..2030100 (+) | 594 | WP_029437255.1 | hypothetical protein | - |
| CUC43_RS11175 (CUC43_11530) | - | 2030119..2030571 (+) | 453 | WP_029437256.1 | hypothetical protein | - |
| CUC43_RS11180 (CUC43_11535) | - | 2030754..2032364 (+) | 1611 | WP_029437257.1 | hypothetical protein | - |
| CUC43_RS34225 | - | 2032630..2034999 (+) | 2370 | WP_240441742.1 | hypothetical protein | - |
| CUC43_RS11190 (CUC43_11545) | - | 2034992..2035678 (+) | 687 | WP_029437261.1 | phage tail domain-containing protein | - |
| CUC43_RS11195 (CUC43_11550) | - | 2035675..2038290 (+) | 2616 | WP_029437262.1 | phage tail spike protein | - |
| CUC43_RS11200 (CUC43_11555) | - | 2038280..2040004 (+) | 1725 | WP_118991686.1 | BppU family phage baseplate upper protein | - |
| CUC43_RS11205 (CUC43_11560) | - | 2040092..2040514 (+) | 423 | WP_029437264.1 | phage holin family protein | - |
| CUC43_RS11210 (CUC43_11565) | - | 2040597..2041790 (-) | 1194 | WP_029437265.1 | IS110 family transposase | - |
| CUC43_RS11220 (CUC43_11575) | - | 2042087..2042884 (+) | 798 | WP_029437266.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 92 a.a. Molecular weight: 10210.78 Da Isoelectric Point: 5.7427
>NTDB_id=255366 CUC43_RS11005 WP_029437228.1 2012271..2012549(+) (abrB) [Bacillus thuringiensis LM1212]
MKNTGVSRKVDELGRVVIPIELRRNLGINEGTALGFHVEGENIVLRKQEKSCFVTGEVSESNMELLDGRMFLSKEGATEL
LDILEKSVKVHA
MKNTGVSRKVDELGRVVIPIELRRNLGINEGTALGFHVEGENIVLRKQEKSCFVTGEVSESNMELLDGRMFLSKEGATEL
LDILEKSVKVHA
Nucleotide
Download Length: 279 bp
>NTDB_id=255366 CUC43_RS11005 WP_029437228.1 2012271..2012549(+) (abrB) [Bacillus thuringiensis LM1212]
ATGAAAAATACAGGTGTTTCAAGAAAAGTGGACGAGCTAGGGCGTGTAGTAATCCCAATAGAGTTACGCAGGAATTTGGG
GATTAATGAAGGGACGGCACTAGGCTTTCATGTTGAGGGTGAAAACATTGTTTTAAGAAAACAAGAAAAGTCATGCTTTG
TAACAGGTGAAGTTTCTGAATCAAACATGGAATTGCTAGACGGACGAATGTTTTTGAGCAAGGAAGGGGCAACTGAATTG
CTGGACATTCTTGAAAAGAGTGTGAAGGTACATGCCTAA
ATGAAAAATACAGGTGTTTCAAGAAAAGTGGACGAGCTAGGGCGTGTAGTAATCCCAATAGAGTTACGCAGGAATTTGGG
GATTAATGAAGGGACGGCACTAGGCTTTCATGTTGAGGGTGAAAACATTGTTTTAAGAAAACAAGAAAAGTCATGCTTTG
TAACAGGTGAAGTTTCTGAATCAAACATGGAATTGCTAGACGGACGAATGTTTTTGAGCAAGGAAGGGGCAACTGAATTG
CTGGACATTCTTGAAAAGAGTGTGAAGGTACATGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
57.831 |
90.217 |
0.522 |