Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   CUC43_RS01910 Genome accession   NZ_CP024771
Coordinates   332709..333503 (-) Length   264 a.a.
NCBI ID   WP_033686380.1    Uniprot ID   A0A4Y6EYG5
Organism   Bacillus thuringiensis LM1212     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 327709..338503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC43_RS01890 (CUC43_01970) - 329511..329744 (+) 234 WP_001190188.1 DUF2627 domain-containing protein -
  CUC43_RS01895 (CUC43_01975) - 329794..330522 (-) 729 WP_098313513.1 glycerophosphodiester phosphodiesterase -
  CUC43_RS01900 (CUC43_01980) - 330574..330720 (+) 147 WP_001247671.1 YycC family protein -
  CUC43_RS01905 (CUC43_01985) - 330887..332413 (-) 1527 WP_029439881.1 glycosyltransferase family 39 protein -
  CUC43_RS01910 (CUC43_01990) spo0A 332709..333503 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  CUC43_RS01920 (CUC43_02000) spoIVB 333791..335089 (-) 1299 WP_029439882.1 SpoIVB peptidase -
  CUC43_RS01925 (CUC43_02005) recN 335208..336947 (-) 1740 WP_029439883.1 DNA repair protein RecN Machinery gene
  CUC43_RS01930 (CUC43_02010) argR 337215..337664 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence


Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4718

>NTDB_id=255341 CUC43_RS01910 WP_033686380.1 332709..333503(-) (spo0A) [Bacillus thuringiensis LM1212]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=255341 CUC43_RS01910 WP_033686380.1 332709..333503(-) (spo0A) [Bacillus thuringiensis LM1212]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTTG
TTTTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGTCAAGAAGATGTGACGAAAAAAGCGGTTGACTTAGGTGCTTCCTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGCAAGCCGAAAAACTTAGATGCGAGCATTACGAGTATCATCCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTATATGTACTTAAGGGAAGCGATCTCTATGGTGTACAACGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTTGAGCGTGCAATCC
GTCACGCGATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4Y6EYG5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818


Multiple sequence alignment