Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DLJ56_RS06335 Genome accession   NZ_CP029629
Coordinates   1194433..1196112 (+) Length   559 a.a.
NCBI ID   WP_000942202.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MOK063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189433..1201112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ56_RS06305 (DLJ56_06305) - 1190286..1190648 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  DLJ56_RS06310 (DLJ56_06310) nusB 1190708..1191097 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  DLJ56_RS06315 (DLJ56_06315) xseA 1191114..1192451 (+) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  DLJ56_RS06320 (DLJ56_06320) - 1192444..1192674 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  DLJ56_RS06325 (DLJ56_06325) - 1192652..1193533 (+) 882 WP_000183382.1 polyprenyl synthetase family protein -
  DLJ56_RS06330 (DLJ56_06330) argR 1193965..1194417 (+) 453 WP_001124985.1 transcriptional regulator ArgR -
  DLJ56_RS06335 (DLJ56_06335) recN 1194433..1196112 (+) 1680 WP_000942202.1 DNA repair protein RecN Machinery gene
  DLJ56_RS06340 (DLJ56_06340) lpdA 1196263..1197684 (+) 1422 WP_070001881.1 dihydrolipoyl dehydrogenase -
  DLJ56_RS06345 (DLJ56_06345) - 1197700..1198692 (+) 993 WP_000568351.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  DLJ56_RS06350 (DLJ56_06350) - 1198692..1199675 (+) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  DLJ56_RS06355 (DLJ56_06355) - 1199688..1200962 (+) 1275 WP_000406846.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64246.84 Da        Isoelectric Point: 4.7634

>NTDB_id=255303 DLJ56_RS06335 WP_000942202.1 1194433..1196112(+) (recN) [Staphylococcus aureus strain MOK063]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRHR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=255303 DLJ56_RS06335 WP_000942202.1 1194433..1196112(+) (recN) [Staphylococcus aureus strain MOK063]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442