Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   UTI89_RS05520 Genome accession   NC_007946
Coordinates   1138479..1138955 (+) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli UTI89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133479..1143955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTI89_RS05500 (UTI89_C1139) - 1133653..1136499 (+) 2847 WP_000820443.1 Ag43/Cah family autotransporter adhesin -
  UTI89_RS05505 (UTI89_C1140) - 1136830..1137651 (+) 822 WP_001234585.1 DUF932 domain-containing protein -
  UTI89_RS05510 (UTI89_C1142) - 1137651..1137896 (+) 246 WP_001164966.1 hypothetical protein -
  UTI89_RS05515 (UTI89_C1143) - 1137990..1138463 (+) 474 WP_001542276.1 antirestriction protein -
  UTI89_RS05520 (UTI89_C1145) radC 1138479..1138955 (+) 477 WP_001186727.1 JAB domain-containing protein Machinery gene
  UTI89_RS05525 (UTI89_C1146) - 1139018..1139239 (+) 222 WP_000692315.1 DUF987 domain-containing protein -
  UTI89_RS05530 (UTI89_C1147) - 1139258..1139902 (+) 645 WP_000086759.1 hypothetical protein -
  UTI89_RS05535 (UTI89_C1148) cbeA 1139952..1140329 (+) 378 WP_001552747.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  UTI89_RS05540 (UTI89_C1149) - 1140376..1140750 (+) 375 WP_001094434.1 TA system toxin CbtA family protein -
  UTI89_RS05545 (UTI89_C1150) - 1140747..1141238 (+) 492 WP_000976859.1 DUF5983 family protein -
  UTI89_RS05550 (UTI89_C1151) - 1141250..1141447 (+) 198 WP_000839257.1 DUF957 domain-containing protein -
  UTI89_RS05555 (UTI89_C1152) - 1141540..1142382 (+) 843 WP_001280460.1 DUF4942 domain-containing protein -
  UTI89_RS05565 (UTI89_C1154) ghrA 1142853..1143791 (+) 939 WP_000351298.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=25524 UTI89_RS05520 WP_001186727.1 1138479..1138955(+) (radC) [Escherichia coli UTI89]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=25524 UTI89_RS05520 WP_001186727.1 1138479..1138955(+) (radC) [Escherichia coli UTI89]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment