Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CT122_RS26960 Genome accession   NZ_CP024712
Coordinates   5716613..5718208 (+) Length   531 a.a.
NCBI ID   WP_099978909.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. actinidiae strain MAFF212063     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5711613..5723208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT122_RS26940 (CT122_26940) pgeF 5713396..5714124 (-) 729 WP_003381265.1 peptidoglycan editing factor PgeF -
  CT122_RS26945 (CT122_26945) rluD 5714121..5715083 (-) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CT122_RS26950 (CT122_26950) - 5715233..5716255 (+) 1023 WP_003381267.1 outer membrane protein assembly factor BamD -
  CT122_RS26955 (CT122_26955) - 5716384..5716623 (+) 240 WP_057403016.1 PP0621 family protein -
  CT122_RS26960 (CT122_26960) pilS 5716613..5718208 (+) 1596 WP_099978909.1 sensor histidine kinase Regulator
  CT122_RS26965 (CT122_26965) pilR 5718211..5719551 (+) 1341 WP_003381273.1 sigma-54-dependent transcriptional regulator Regulator
  CT122_RS26970 (CT122_26970) - 5720012..5720629 (+) 618 WP_003381275.1 TetR/AcrR family transcriptional regulator -
  CT122_RS26975 (CT122_26975) - 5720711..5721821 (+) 1111 Protein_5034 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58348.32 Da        Isoelectric Point: 6.9272

>NTDB_id=255197 CT122_RS26960 WP_099978909.1 5716613..5718208(+) (pilS) [Pseudomonas syringae pv. actinidiae strain MAFF212063]
MTADTPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANQNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLKESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAATD
QSIHVQISPGMLTTRMDAGQLTQIITNLVQNGLRYSSRSHPSAQVWLKLQPDRESDLPILEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYLPRLHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=255197 CT122_RS26960 WP_099978909.1 5716613..5718208(+) (pilS) [Pseudomonas syringae pv. actinidiae strain MAFF212063]
GTGACCGCTGATACGCCTTCGCTTACCAGCCCGCAGGCACAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGTCTGGAAACCGAGTTGCTGCAACTGGCCAATCAGAATCTGTTCCGTT
CGGGTTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAACGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACTGACGCAATCATGCTTTCCGCGCTGTTTTATGCGGCCGGCGGGCCGTCGAGCGGCATCGGCAACCT
GTTGATCGCGTCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGTATTGGCCTGTTGATCGCCGCCGTTTCTGCCATTG
GCATTATCTACCTGACGTTCTATATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGCTCTCTGGGC
GCGCTGTGCTTCGCCGCCGCGCTGCTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAAAG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAACGCTCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGATG
CGCGCCGTCAGGTGTTGCTGGCCAATCAGGGGGCCTTGACGCTGCTGGGCCACGAACGACTGGTCGGCCAGGTCATCGAC
GCTTACTCGCCGCAGTTGGTAGAGCGCCTGCGCCAGTGGCTGATTAACCCGATCATGGTGCCGCGCAGCATCACCACTTC
ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGTCAAACGCTGATTTTCCTTGAGG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAA
ATACGTAATCCGCTGGGCGCGGTCAGCCACGCTGCGCAGTTACTCAAGGAGTCGGAAGACCTCAGCGCGCCGGACCGCCG
TCTGGGGCAGATTATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAACTGTCTCGCCGACGCG
AAGCACAGCCAGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGCAGCTCGGCGGCTACGGAT
CAGTCGATTCATGTGCAAATTAGCCCCGGCATGCTGACCACTCGCATGGACGCCGGTCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCTTACGTTACAGCAGCCGCAGTCACCCGTCGGCGCAAGTCTGGCTGAAGCTGCAGCCAGACCGGG
AAAGCGATTTACCGATTCTGGAAGTCCTGGACGACGGGCCGGGTGTCAGCGAACAACACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACGGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATACCTCCCCCGACTACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.654

100

0.618

Multiple sequence alignment