Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DSY_RS06715 Genome accession   NC_007907
Coordinates   1489181..1491040 (-) Length   619 a.a.
NCBI ID   WP_005814582.1    Uniprot ID   Q24Y43
Organism   Desulfitobacterium hafniense Y51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1484181..1496040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSY_RS06680 (DSY1256) - 1484270..1485120 (+) 851 Protein_1328 Rpn family recombination-promoting nuclease/putative transposase -
  DSY_RS06685 - 1485910..1486131 (+) 222 WP_005814576.1 hypothetical protein -
  DSY_RS06690 (DSY1257) - 1486125..1486520 (+) 396 WP_005814577.1 response regulator -
  DSY_RS06695 - 1486805..1487044 (-) 240 WP_005814578.1 DUF2922 domain-containing protein -
  DSY_RS06700 - 1487098..1487322 (-) 225 WP_005814579.1 DUF1659 domain-containing protein -
  DSY_RS06705 (DSY1258) - 1487514..1488359 (+) 846 WP_041272085.1 DUF3102 domain-containing protein -
  DSY_RS06710 (DSY1259) - 1488462..1489151 (-) 690 WP_005814581.1 GTP pyrophosphokinase -
  DSY_RS06715 (DSY1260) rcrQ 1489181..1491040 (-) 1860 WP_005814582.1 ABC transporter ATP-binding protein Regulator
  DSY_RS06720 (DSY1261) rcrP 1491037..1492797 (-) 1761 WP_005814583.1 ABC transporter ATP-binding protein Regulator
  DSY_RS06725 (DSY1262) - 1492937..1493440 (-) 504 WP_242662039.1 winged helix-turn-helix domain-containing protein -
  DSY_RS06730 (DSY1263) - 1493694..1494119 (-) 426 WP_011459595.1 AfsR/SARP family transcriptional regulator -
  DSY_RS06740 (DSY1264) - 1494652..1494858 (+) 207 Protein_1339 AIM24 family protein -
  DSY_RS06745 (DSY1265) - 1494944..1495459 (-) 516 WP_005814588.1 GNAT family N-acetyltransferase -
  DSY_RS28415 - 1495790..1495939 (+) 150 WP_015943988.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67962.46 Da        Isoelectric Point: 6.7227

>NTDB_id=25518 DSY_RS06715 WP_005814582.1 1489181..1491040(-) (rcrQ) [Desulfitobacterium hafniense Y51]
MSEHQTRTQNGGPMGGPASGPPMGGGEKAKDFQGTWGKLIRYCKGYMPVIITALVIAALGTLLQIIGPDQLKNMTNEITK
GLPALINGVPVSGAIDFNAVFNIGMLLVCFYAASGIFSFAENFIMATVTAKISKSMRTDIAKKINKLPLKYFDKTSYGDV
ISRVTNDVDAIGQTLNQSLDNLVRAVTMFVGSLIMMFYNSWILALVAIGSTLIGFVLMALIMSKSQKYFTVQQQGLGDIN
GHIEEIYSGHNVVKAYNGGSKAKKTFEEINTSLYDSGWKSQFMSGMMMPIMGFIGNFGYVAVCVVGAALAMKGTISFGVI
VAFMIYIRLFTQPLSQLAQSMQQLQRTAAASERVFEFFAEEELAGESQQLKKLENVKGHVEFQNVHFGYEKDKTIINNFS
AQIRAGQKVAIVGPTGAGKTTMVNLLMRFYEIDSGEIRIDGIPISHVSRENVHDQFCMVLQDTWLFEGTIKENIIYNKQG
VTDEEVIAACKSVGIHHFIRTLPQGYDTILNDKANLSAGQKQLVTIARAIIQNSPLLILDEATSSVDTRTERLVQDAMNK
LTQDRTSFVIAHRLSTIKDADLILVMKDGDIIESGDHEELLGKGGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=25518 DSY_RS06715 WP_005814582.1 1489181..1491040(-) (rcrQ) [Desulfitobacterium hafniense Y51]
ATGAGTGAGCATCAAACCAGAACACAAAATGGCGGCCCCATGGGTGGGCCGGCAAGTGGCCCACCCATGGGCGGCGGCGA
AAAAGCCAAGGATTTCCAAGGAACATGGGGCAAGCTGATCCGCTACTGTAAAGGCTACATGCCCGTCATTATCACCGCCC
TTGTCATCGCGGCTTTGGGGACACTCCTGCAAATCATCGGTCCGGACCAACTGAAGAACATGACCAATGAGATCACCAAG
GGGCTGCCGGCCCTGATCAACGGAGTACCGGTGTCTGGGGCCATCGATTTTAACGCGGTCTTCAATATTGGTATGCTGCT
TGTCTGTTTCTATGCAGCCTCAGGTATCTTCAGCTTTGCCGAGAATTTTATCATGGCTACGGTAACTGCTAAAATATCTA
AAAGCATGCGCACTGACATCGCCAAGAAGATCAACAAACTGCCCCTCAAATACTTTGACAAAACAAGTTACGGCGATGTC
ATCAGCCGCGTGACCAACGATGTTGACGCCATTGGCCAAACCCTCAATCAGAGCCTCGATAATTTGGTGAGGGCAGTTAC
CATGTTTGTCGGTTCCCTGATCATGATGTTCTACAACAGTTGGATTCTGGCCTTGGTTGCCATCGGCTCCACTTTGATCG
GGTTTGTTCTGATGGCGCTCATCATGTCCAAATCTCAAAAGTATTTTACCGTGCAGCAGCAGGGACTCGGCGATATCAAT
GGCCATATTGAAGAAATCTATTCGGGCCACAATGTTGTCAAGGCCTATAACGGCGGCAGCAAGGCGAAAAAGACCTTTGA
GGAGATCAACACGTCCCTGTATGACAGCGGTTGGAAATCTCAATTTATGTCGGGGATGATGATGCCGATTATGGGCTTCA
TCGGCAACTTCGGCTATGTGGCGGTGTGCGTGGTCGGCGCGGCCTTGGCTATGAAAGGCACGATCTCCTTCGGCGTCATC
GTTGCCTTTATGATCTATATCCGCCTCTTTACCCAGCCTTTGTCCCAGTTGGCTCAATCTATGCAGCAGCTGCAAAGAAC
AGCCGCCGCCAGTGAGCGTGTCTTTGAATTCTTCGCCGAAGAAGAGTTGGCCGGGGAAAGCCAGCAGCTCAAAAAGCTGG
AGAATGTCAAAGGCCACGTGGAGTTTCAGAATGTTCACTTTGGCTATGAGAAGGACAAAACCATTATCAATAATTTTTCC
GCTCAGATCAGAGCCGGCCAGAAGGTCGCCATTGTGGGGCCTACCGGTGCGGGAAAAACGACCATGGTCAATCTGCTGAT
GCGCTTTTACGAAATCGACAGCGGCGAGATTCGCATAGACGGTATCCCCATCAGCCATGTGAGCAGAGAAAACGTCCATG
ACCAATTCTGTATGGTATTGCAGGACACCTGGCTCTTTGAGGGAACTATCAAAGAAAACATCATCTACAACAAGCAGGGC
GTTACCGATGAAGAAGTGATCGCCGCCTGCAAGTCTGTGGGCATCCACCACTTTATCCGCACCCTGCCCCAGGGCTATGA
CACCATCCTCAATGATAAAGCCAACCTGTCGGCAGGCCAAAAGCAGCTTGTGACCATTGCCCGCGCGATCATTCAAAATT
CACCCCTTCTGATCCTGGATGAAGCGACCAGCTCGGTAGACACCCGTACGGAAAGGCTCGTACAGGATGCCATGAATAAG
CTGACCCAGGACCGAACCTCATTTGTGATCGCCCATCGCCTCTCCACCATCAAAGATGCCGATCTGATTTTGGTGATGAA
AGACGGCGACATCATCGAAAGCGGCGATCACGAGGAACTCCTCGGCAAAGGCGGCTTCTACGCCGAGCTTTATAACAGCC
AATTTGAACAGGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(51-334)

ABC transporter (ABC_tran)

(397-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q24Y43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.118

93.053

0.532

Multiple sequence alignment