Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DMB38_RS28925 Genome accession   NZ_CP029618
Coordinates   6618501..6619166 (-) Length   221 a.a.
NCBI ID   WP_125937611.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6613501..6624166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS28900 (DMB38_28890) - 6614645..6614878 (+) 234 WP_240662516.1 hypothetical protein -
  DMB38_RS28905 (DMB38_28895) - 6614973..6615257 (-) 285 WP_240662517.1 hypothetical protein -
  DMB38_RS28910 (DMB38_28900) - 6615504..6615899 (+) 396 WP_125937609.1 DUF6223 family protein -
  DMB38_RS28915 (DMB38_28905) - 6616094..6618298 (+) 2205 WP_125937610.1 MMPL family transporter -
  DMB38_RS28925 (DMB38_28915) vraR 6618501..6619166 (-) 666 WP_125937611.1 response regulator transcription factor Regulator
  DMB38_RS28930 (DMB38_28920) - 6619163..6620293 (-) 1131 WP_125937612.1 sensor histidine kinase -
  DMB38_RS28935 (DMB38_28925) - 6620852..6622375 (-) 1524 WP_125937613.1 PQQ-dependent sugar dehydrogenase -
  DMB38_RS28940 (DMB38_28930) - 6622502..6623497 (-) 996 WP_125937614.1 LamG-like jellyroll fold domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24099.83 Da        Isoelectric Point: 5.9492

>NTDB_id=255161 DMB38_RS28925 WP_125937611.1 6618501..6619166(-) (vraR) [Streptomyces sp. WAC 06738]
MIRVLMLDDQPLLRSGFRALLDAEDDIEVVAEAGDGKEGLALAREHLPDLALVDLSMPVMDGIETTRRIAADPALAHIHV
VILTNYGLDENVFNALRAGAAGFLVKDILPEDLLHAVRVAARGDALLAPSITRRLINKYVSRPPLDPSAVRGLEELTNRE
RESVALAAQGLSNDQIADRMVISPLTAKTHINRAMFKLHARDRAQLVVIAYESGLVTPRGR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=255161 DMB38_RS28925 WP_125937611.1 6618501..6619166(-) (vraR) [Streptomyces sp. WAC 06738]
GTGATCCGTGTACTGATGCTCGACGACCAGCCGCTGCTGCGCAGCGGGTTCCGCGCGCTGCTCGACGCCGAGGACGACAT
CGAGGTGGTGGCGGAGGCGGGCGACGGCAAGGAGGGCCTGGCACTGGCGCGGGAGCATCTGCCGGACCTCGCGCTCGTGG
ACCTGTCGATGCCGGTGATGGACGGCATCGAGACGACCAGGCGCATCGCCGCGGACCCGGCGCTCGCCCACATCCACGTG
GTGATCCTCACCAACTACGGCCTGGACGAGAACGTGTTCAACGCGCTGCGGGCCGGCGCGGCCGGGTTCCTGGTCAAGGA
CATCCTGCCCGAGGACCTGCTGCACGCCGTACGGGTGGCCGCCCGCGGCGACGCGCTGCTGGCGCCGTCGATCACCCGCA
GGCTGATCAACAAGTACGTGTCCCGGCCGCCGCTGGACCCGTCGGCCGTCCGCGGCCTGGAGGAGCTCACCAACCGGGAG
CGGGAGTCCGTCGCGCTGGCCGCGCAGGGGCTCTCCAACGACCAGATCGCCGACCGCATGGTGATCAGCCCGCTGACCGC
GAAGACCCACATCAACCGGGCGATGTTCAAGCTGCACGCGCGCGACCGCGCGCAACTGGTGGTCATCGCCTACGAGTCGG
GCCTGGTGACCCCGCGCGGCCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

97.285

0.371