Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   UTI89_RS02390 Genome accession   NC_007946
Coordinates   508536..509141 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli UTI89     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 503536..514141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTI89_RS29730 - 504090..504188 (+) 99 Protein_458 hypothetical protein -
  UTI89_RS02360 (UTI89_C0493) rsmS 504241..504402 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  UTI89_RS02365 (UTI89_C0494) priC 504416..504943 (-) 528 WP_000844868.1 primosomal replication protein N'' -
  UTI89_RS02370 (UTI89_C0495) ybaN 505013..505390 (+) 378 WP_001188900.1 DUF454 family protein -
  UTI89_RS02375 (UTI89_C0496) apt 505543..506094 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  UTI89_RS02380 (UTI89_C0497) dnaX 506223..508154 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  UTI89_RS02385 (UTI89_C0499) ybaB 508207..508536 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  UTI89_RS02390 (UTI89_C0500) recR 508536..509141 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  UTI89_RS02395 (UTI89_C0501) htpG 509251..511125 (+) 1875 WP_000678211.1 molecular chaperone HtpG -
  UTI89_RS02400 (UTI89_C0502) adk 511306..511950 (+) 645 WP_001331495.1 adenylate kinase -
  UTI89_RS02405 (UTI89_C0503) hemH 512082..513044 (+) 963 WP_001250114.1 ferrochelatase -
  UTI89_RS02410 (UTI89_C0504) aes 513041..514000 (-) 960 WP_000801795.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=25516 UTI89_RS02390 WP_001195025.1 508536..509141(+) (recR) [Escherichia coli UTI89]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=25516 UTI89_RS02390 WP_001195025.1 508536..509141(+) (recR) [Escherichia coli UTI89]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment