Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DSY_RS02410 Genome accession   NC_007907
Coordinates   506651..508000 (+) Length   449 a.a.
NCBI ID   WP_011459079.1    Uniprot ID   Q250R4
Organism   Desulfitobacterium hafniense Y51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 501651..513000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSY_RS02390 (DSY0435) - 501839..502309 (+) 471 WP_005810233.1 CtsR family transcriptional regulator -
  DSY_RS02395 (DSY0436) - 502326..502823 (+) 498 WP_015942740.1 UvrB/UvrC motif-containing protein -
  DSY_RS02400 (DSY0437) - 502828..503880 (+) 1053 WP_005810224.1 protein arginine kinase -
  DSY_RS02405 (DSY0438) - 503918..506398 (+) 2481 WP_005810223.1 ATP-dependent Clp protease ATP-binding subunit -
  DSY_RS02410 (DSY0439) radA 506651..508000 (+) 1350 WP_011459079.1 DNA repair protein RadA Machinery gene
  DSY_RS02415 (DSY0440) - 508136..508528 (-) 393 WP_005810220.1 hypothetical protein -
  DSY_RS02420 (DSY0441) - 508730..509206 (+) 477 WP_005810219.1 CarD family transcriptional regulator -
  DSY_RS02425 (DSY0442) - 509288..510454 (+) 1167 WP_015942743.1 PIN/TRAM domain-containing protein -
  DSY_RS02430 (DSY0443) ispD 510447..511175 (+) 729 WP_015942744.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DSY_RS02435 (DSY0444) ispF 511265..511741 (+) 477 WP_011459082.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 48448.25 Da        Isoelectric Point: 6.1974

>NTDB_id=25513 DSY_RS02410 WP_011459079.1 506651..508000(+) (radA) [Desulfitobacterium hafniense Y51]
MAKVKTRFFCQSCGQESPRWLGKCPGCGEWNTLVEEVVERAAAKRTPLGVKATPLTEIQIREEERVSSGSQELNRVLGGG
IVPGSFVLLGGEPGIGKSTLLLQTAGLLAKGMDVLYISGEESEKQIKLRAERLGIKESRLHILTETRLEVVRDVALAMGP
GLLIVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKEEEIPIFLVGHVTKEGAIAGPRVLEHIVDTVLYFEGDRHHVY
RLLRAVKNRFGSTNEIGVFEMHEDGLVEVPNPSKVFLGENSATAPGSSVAVIVEGSRPLLVEIQALVTPTTYGPPRRTAT
GIDYNRILMLLAVLDKKVGLHLGAQDVFINIAGGIRIDEPGVDLACIAAIASSLGERPLKRYALIGEVGLTGEVRGISQI
ENRVKEAVKLGFEGCIIPRINVSAVKVPGNFTVIAVKTVEEAVQVMFEQ

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=25513 DSY_RS02410 WP_011459079.1 506651..508000(+) (radA) [Desulfitobacterium hafniense Y51]
TTGGCAAAGGTAAAGACGCGGTTTTTTTGTCAGTCCTGCGGTCAGGAAAGCCCTCGTTGGTTAGGGAAATGTCCGGGCTG
TGGAGAATGGAATACCTTAGTTGAAGAAGTTGTGGAGCGTGCCGCTGCCAAGCGTACCCCCTTAGGAGTAAAGGCGACGC
CTTTGACAGAGATTCAGATCCGGGAGGAAGAACGGGTCAGCTCGGGCAGTCAGGAGTTGAACAGGGTCTTGGGTGGGGGA
ATCGTCCCCGGCTCCTTTGTTCTTCTGGGCGGCGAGCCGGGCATCGGCAAATCCACCCTGCTTCTGCAAACGGCGGGATT
ATTGGCCAAGGGCATGGATGTACTGTATATCTCCGGAGAAGAATCGGAGAAGCAGATTAAGCTGAGAGCAGAGCGGCTGG
GCATTAAGGAATCCCGTTTGCATATTTTAACGGAGACCCGGCTGGAGGTGGTCCGGGACGTGGCTTTGGCTATGGGGCCG
GGTCTCTTAATCGTCGATTCTATCCAAACCATGGTGCTGGAAGAGCTGCAGGCCGCCGCAGGCAGTGTGAGCCAGGTGCG
GGAGGGCGCAGCCTTTTTGATGCGGTTAGCCAAAGAGGAGGAGATCCCCATCTTTCTCGTCGGCCATGTGACCAAGGAAG
GAGCTATCGCCGGACCGAGAGTACTGGAACATATTGTGGATACGGTGCTTTATTTTGAAGGGGACCGTCATCATGTTTAT
CGTTTGTTAAGGGCTGTGAAGAATCGTTTCGGCTCCACCAATGAGATTGGTGTTTTTGAGATGCATGAAGACGGCCTGGT
GGAGGTTCCCAATCCCTCCAAAGTGTTCTTGGGAGAGAATTCAGCCACAGCCCCCGGCTCCTCGGTGGCGGTGATCGTGG
AAGGTTCCCGGCCTTTGCTGGTGGAGATTCAGGCTCTCGTGACACCCACCACCTATGGACCGCCTCGCCGTACGGCTACG
GGAATCGACTACAACCGGATTTTGATGCTCTTGGCTGTTTTGGATAAAAAGGTAGGCCTTCATCTGGGCGCTCAGGATGT
GTTTATCAATATTGCCGGTGGTATCCGCATCGATGAACCGGGAGTGGATCTGGCCTGCATTGCAGCCATTGCCTCCAGTC
TGGGAGAACGTCCGCTGAAGCGTTATGCTCTGATTGGGGAAGTGGGGCTTACCGGAGAAGTGCGCGGGATTTCTCAGATC
GAGAACCGGGTGAAGGAAGCTGTGAAGCTGGGCTTTGAAGGCTGTATTATTCCCCGGATCAATGTCTCGGCGGTGAAGGT
TCCCGGCAATTTCACGGTGATTGCGGTGAAGACGGTGGAGGAGGCTGTCCAGGTTATGTTTGAGCAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(66-214)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q250R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.709

100

0.584
  radA Streptococcus pneumoniae Rx1

52.876

100

0.532
  radA Streptococcus pneumoniae D39

52.876

100

0.532
  radA Streptococcus pneumoniae R6

52.876

100

0.532
  radA Streptococcus pneumoniae TIGR4

52.876

100

0.532
  radA Streptococcus mitis NCTC 12261

52.876

100

0.532
  radA Streptococcus mitis SK321

52.876

100

0.532

Multiple sequence alignment