Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DMA15_RS27240 Genome accession   NZ_CP029617
Coordinates   6056939..6057613 (-) Length   224 a.a.
NCBI ID   WP_125515381.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6051939..6062613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS27225 (DMA15_27200) - 6052601..6053683 (+) 1083 WP_125515379.1 thiamine ABC transporter substrate-binding protein -
  DMA15_RS27230 (DMA15_27205) - 6053755..6055365 (+) 1611 WP_240660267.1 iron ABC transporter permease -
  DMA15_RS27235 (DMA15_27210) - 6055365..6056393 (+) 1029 WP_125515380.1 ABC transporter ATP-binding protein -
  DMA15_RS27240 (DMA15_27215) vraR 6056939..6057613 (-) 675 WP_125515381.1 response regulator transcription factor Regulator
  DMA15_RS27245 (DMA15_27220) - 6057670..6058890 (-) 1221 WP_125515382.1 sensor histidine kinase -
  DMA15_RS27250 (DMA15_27225) - 6059359..6060486 (+) 1128 WP_125515383.1 glycosyltransferase family 4 protein -
  DMA15_RS27255 (DMA15_27230) - 6060453..6061625 (-) 1173 WP_125515384.1 LOG family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24010.57 Da        Isoelectric Point: 6.0155

>NTDB_id=255074 DMA15_RS27240 WP_125515381.1 6056939..6057613(-) (vraR) [Streptomyces sp. WAC 01529]
MIRTLVADDQAVVRTGFVNLLNTQDDIQVVAEAEDGAQAVRLAAEHRPDLVLLDIRMPHMNGIDAAREILAASGGATKAL
MLTTFGLDEYVYDALTAGASGFLLKDATFPELLHAVRVVAAGNALLSPEITKRLVAEFTRQRAAAPPTPTGGVEGLTARE
AEVLVLIAQGLSNAEIADRLTITDHTVKTHINRLFTKRGLRDRAQAVILAYELGLVRATSPAQR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=255074 DMA15_RS27240 WP_125515381.1 6056939..6057613(-) (vraR) [Streptomyces sp. WAC 01529]
GTGATCAGAACTCTCGTGGCCGACGACCAGGCAGTCGTCCGCACCGGCTTCGTGAACCTCCTCAACACCCAGGACGACAT
CCAGGTGGTCGCCGAGGCCGAGGACGGCGCCCAGGCCGTCCGGCTGGCCGCCGAGCACCGCCCGGACCTGGTCCTCCTGG
ACATCCGCATGCCGCACATGAACGGCATCGACGCGGCCCGCGAGATCCTCGCCGCGTCCGGCGGCGCGACGAAGGCGCTG
ATGCTGACGACGTTCGGACTCGACGAGTACGTGTACGACGCGCTGACCGCCGGAGCCTCCGGCTTCCTGCTCAAGGACGC
CACGTTCCCCGAACTGCTGCACGCGGTACGGGTCGTGGCGGCCGGCAACGCGCTGCTGTCGCCGGAGATCACCAAGCGGC
TCGTCGCGGAGTTCACACGGCAGCGGGCCGCCGCGCCGCCGACGCCGACGGGCGGCGTCGAAGGCCTGACGGCCCGCGAG
GCCGAGGTGCTCGTCCTCATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGACCGCCTCACGATCACCGACCACACCGT
GAAGACGCACATCAACCGCCTCTTCACGAAGAGGGGCCTGCGCGACCGCGCCCAGGCGGTGATCCTCGCGTACGAACTGG
GGCTCGTCCGCGCCACTTCACCGGCCCAGCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.815

96.429

0.384