Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CUC45_RS04575 Genome accession   NZ_CP024683
Coordinates   994855..995469 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain UMH13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 989855..1000469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC45_RS04555 (CUC45_04640) - 990225..991985 (-) 1761 WP_003035878.1 Lon protease family protein -
  CUC45_RS04560 (CUC45_04645) matP 992171..992623 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  CUC45_RS04565 (CUC45_04650) ompA 992712..993770 (-) 1059 WP_003836839.1 porin OmpA -
  CUC45_RS04570 (CUC45_04655) sulA 994128..994637 (-) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  CUC45_RS04575 (CUC45_04660) sxy/tfoX 994855..995469 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  CUC45_RS04580 (CUC45_04665) yccS 995447..997600 (-) 2154 WP_032941200.1 YccS family putative transporter -
  CUC45_RS04585 (CUC45_04670) - 997619..998065 (-) 447 WP_003035892.1 YccF domain-containing protein -
  CUC45_RS04590 (CUC45_04675) helD 998191..1000245 (+) 2055 WP_032948946.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=255039 CUC45_RS04575 WP_003035889.1 994855..995469(+) (sxy/tfoX) [Citrobacter freundii strain UMH13]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=255039 CUC45_RS04575 WP_003035889.1 994855..995469(+) (sxy/tfoX) [Citrobacter freundii strain UMH13]
ATGAAAGAGCTTTCTTATGCACGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACTGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment