Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DMA15_RS11250 Genome accession   NZ_CP029617
Coordinates   2508418..2510337 (+) Length   639 a.a.
NCBI ID   WP_125512631.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2503418..2515337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS11235 (DMA15_11230) - 2504719..2505021 (+) 303 WP_125512628.1 YtxH domain-containing protein -
  DMA15_RS11240 (DMA15_11235) - 2505096..2506523 (+) 1428 WP_125512629.1 FGGY family carbohydrate kinase -
  DMA15_RS11245 (DMA15_11240) rcrP 2506685..2508418 (+) 1734 WP_125512630.1 ABC transporter ATP-binding protein Regulator
  DMA15_RS11250 (DMA15_11245) rcrQ 2508418..2510337 (+) 1920 WP_125512631.1 ABC transporter ATP-binding protein Regulator
  DMA15_RS11255 (DMA15_11250) - 2510454..2511800 (-) 1347 WP_125512632.1 RNA polymerase sigma factor -
  DMA15_RS11260 (DMA15_11255) dnaG 2511920..2513818 (-) 1899 WP_125512633.1 DNA primase -
  DMA15_RS11265 (DMA15_11260) - 2513895..2515157 (-) 1263 WP_125512634.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 69103.46 Da        Isoelectric Point: 4.9390

>NTDB_id=255029 DMA15_RS11250 WP_125512631.1 2508418..2510337(+) (rcrQ) [Streptomyces sp. WAC 01529]
MAGPGGPMMGPDSRSMDFKGSGKRLLAQFKPERATMYGMLAAGILSVALSVLGPKILGKATDLLFAGIVGRDMDGDLTKE
QVIEGMRAKGDGGMADMLTGVDFTPGEGIDFGAMGEVLLLALGTFLAAGLLMAVATRLSNRAINRTVFRMRGDVQEKLSR
LPLSYFDKRQRGEVLSRATNDIDNINQTLQQTMGQLINSLLTIIGVLVMMFWVSPLLALVALVTVPLSFLVATKVGKRSQ
PQFVQQWKTTGKLNAHIEEMYTGHALVKVFGRHEESAKAFAEQNEQLYEAGFKAQFNSGVMQPLMFFMSNLNYVLVAVVG
GLRVASGSLSIGDVQAFIQYSRQFSMPLTQLASMANLVQSGVASAERIFEILDAEEQEADPVPGERPERLRGRVEMEHVS
FRYAEDKPLIEDLSLVVDPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIARMSRDELRTGIGMVLQDTWLF
GGTIAENIAYGAAKDVTREEIEEAARAAHADRFVRTLPDGYDTVIDDDGTGVSAGEKQLITIARAFLSDPVILVLDEATS
SVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGTHDALLAAGGAYARLYAAQFAEAVAEVD

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=255029 DMA15_RS11250 WP_125512631.1 2508418..2510337(+) (rcrQ) [Streptomyces sp. WAC 01529]
ATGGCTGGTCCTGGCGGACCGATGATGGGCCCCGACTCCCGGTCGATGGATTTCAAGGGCTCCGGCAAGCGGCTGCTCGC
GCAGTTCAAGCCGGAACGGGCCACGATGTACGGGATGCTCGCGGCCGGAATCCTGAGCGTCGCGCTCTCCGTCCTCGGCC
CGAAGATCCTCGGCAAGGCGACCGACCTGCTCTTCGCGGGCATCGTCGGCCGTGACATGGACGGCGACCTGACGAAGGAA
CAGGTCATCGAGGGTATGCGCGCCAAGGGCGACGGCGGCATGGCCGACATGCTCACCGGCGTCGACTTCACGCCCGGCGA
GGGCATCGACTTCGGCGCGATGGGCGAGGTCCTGCTGCTCGCGCTCGGCACGTTCCTGGCCGCGGGCCTGCTGATGGCGG
TGGCGACGCGGCTCTCCAACCGCGCCATCAACCGGACCGTCTTCCGGATGCGTGGCGACGTACAGGAGAAGCTGTCGCGG
CTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGAGCCGTGCGACGAACGACATCGACAACATCAACCA
GACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACGATCATCGGCGTACTGGTGATGATGTTCTGGGTGT
CGCCGCTGCTCGCGCTGGTGGCGCTGGTCACCGTGCCGCTGTCGTTCCTCGTGGCGACGAAGGTCGGCAAGCGGTCGCAG
CCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCACGCGCTCGT
AAAGGTGTTCGGCCGGCACGAGGAGTCGGCGAAGGCGTTCGCCGAGCAGAACGAGCAGTTGTACGAGGCCGGGTTCAAGG
CGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGTTCTTCATGTCGAACCTCAACTACGTGCTCGTGGCCGTGGTCGGT
GGTCTGCGCGTCGCGTCCGGGTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGATGCC
GCTCACGCAGCTCGCCTCGATGGCGAACCTCGTGCAGTCGGGCGTCGCCTCCGCCGAACGGATCTTCGAGATCCTCGACG
CGGAGGAGCAGGAGGCCGACCCGGTGCCCGGCGAGCGGCCCGAGAGGCTGCGCGGGCGCGTCGAGATGGAGCACGTCTCC
TTCCGCTACGCCGAGGACAAGCCGCTCATCGAGGACCTGTCCCTCGTCGTGGACCCGGGCCACACGGTCGCCATCGTGGG
GCCGACCGGTGCGGGCAAGACGACGCTGGTCAACCTGCTCATGCGGTTCTACGAGGTGACCGGCGGGCGCATCACCCTGG
ACGGGGTCGACATCGCGAGGATGTCGCGGGACGAGCTGCGGACCGGGATCGGCATGGTCCTCCAGGACACCTGGCTGTTC
GGCGGGACCATCGCGGAGAACATCGCGTACGGCGCCGCGAAGGACGTCACGCGCGAGGAGATCGAGGAGGCGGCGCGGGC
CGCCCACGCGGATCGCTTCGTGCGGACGCTGCCCGACGGGTACGACACCGTCATCGACGACGACGGCACGGGCGTGAGCG
CGGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTCGACGAGGCGACCAGC
TCCGTGGACACGCGGACCGAGGTGCTCATCCAGAAGGCGATGGCGCGCCTCGCGCACGGGCGCACTTCCTTCGTCATCGC
GCACCGGCTCTCCACGATCCGCGACGCCGACACGATTCTGGTCATGGAGGACGGGGCGATCGTGGAGCAGGGGACGCATG
ATGCCTTGCTGGCGGCCGGTGGGGCGTATGCGCGGCTGTACGCCGCGCAGTTCGCGGAGGCCGTTGCCGAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(411-560)

ABC transporter transmembrane region (ABC_membrane)

(41-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.262

96.714

0.399