Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CUC46_RS05040 Genome accession   NZ_CP024680
Coordinates   1071128..1071742 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain UMH14     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066128..1076742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC46_RS05020 (CUC46_05105) - 1066495..1068255 (-) 1761 WP_003035878.1 Lon protease family protein -
  CUC46_RS05025 (CUC46_05110) matP 1068441..1068893 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  CUC46_RS05030 (CUC46_05115) ompA 1068985..1070043 (-) 1059 WP_003836839.1 porin OmpA -
  CUC46_RS05035 (CUC46_05120) sulA 1070401..1070910 (-) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  CUC46_RS05040 (CUC46_05125) sxy/tfoX 1071128..1071742 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  CUC46_RS05045 (CUC46_05130) yccS 1071720..1073873 (-) 2154 WP_032939270.1 YccS family putative transporter -
  CUC46_RS05050 (CUC46_05135) - 1073892..1074338 (-) 447 WP_003035892.1 YccF domain-containing protein -
  CUC46_RS05055 (CUC46_05140) helD 1074464..1076518 (+) 2055 WP_121571601.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=255016 CUC46_RS05040 WP_003035889.1 1071128..1071742(+) (sxy/tfoX) [Citrobacter freundii strain UMH14]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=255016 CUC46_RS05040 WP_003035889.1 1071128..1071742(+) (sxy/tfoX) [Citrobacter freundii strain UMH14]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGCG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTAACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment