Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DMA15_RS03440 Genome accession   NZ_CP029617
Coordinates   825001..825210 (-) Length   69 a.a.
NCBI ID   WP_125511173.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820001..830210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS03415 (DMA15_03410) - 820465..821316 (+) 852 WP_125511168.1 helix-turn-helix transcriptional regulator -
  DMA15_RS03420 (DMA15_03415) - 821396..822127 (+) 732 WP_125511169.1 GntR family transcriptional regulator -
  DMA15_RS03425 (DMA15_03420) - 822364..822774 (+) 411 WP_276314321.1 NUDIX domain-containing protein -
  DMA15_RS03430 - 822696..823748 (+) 1053 WP_125511171.1 hypothetical protein -
  DMA15_RS03435 (DMA15_03430) - 824128..824901 (+) 774 WP_125511172.1 GAF and ANTAR domain-containing protein -
  DMA15_RS03440 (DMA15_03435) dinR/lexA 825001..825210 (-) 210 WP_125511173.1 hypothetical protein Regulator
  DMA15_RS03445 (DMA15_03440) - 825207..825416 (-) 210 WP_125511174.1 hypothetical protein -
  DMA15_RS03450 (DMA15_03445) - 825520..825729 (+) 210 WP_125511175.1 hypothetical protein -
  DMA15_RS03455 (DMA15_03450) - 825785..826150 (-) 366 WP_125511176.1 hypothetical protein -
  DMA15_RS37290 - 826158..826343 (-) 186 WP_240660152.1 LysM domain-containing protein -
  DMA15_RS03460 (DMA15_03455) - 826317..826901 (-) 585 Protein_684 N-acetylmuramoyl-L-alanine amidase -
  DMA15_RS03465 (DMA15_03460) - 826904..827359 (-) 456 WP_125511178.1 hypothetical protein -
  DMA15_RS03470 (DMA15_03465) - 827349..827528 (-) 180 WP_125511179.1 hypothetical protein -
  DMA15_RS03475 (DMA15_03470) - 827533..827784 (-) 252 WP_125511180.1 hypothetical protein -
  DMA15_RS03480 (DMA15_03475) - 827811..828848 (-) 1038 WP_125511181.1 hypothetical protein -
  DMA15_RS03485 (DMA15_03480) - 828845..829990 (-) 1146 WP_206302647.1 DUF5047 domain-containing protein -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7907.00 Da        Isoelectric Point: 7.2428

>NTDB_id=255015 DMA15_RS03440 WP_125511173.1 825001..825210(-) (dinR/lexA) [Streptomyces sp. WAC 01529]
MIDHLTERQEQIVRCIREWVAERGDYPSLSEIGGCVGLSSKSAVHYQLHRLEARGVVVREAGQPYRLAW

Nucleotide


Download         Length: 210 bp        

>NTDB_id=255015 DMA15_RS03440 WP_125511173.1 825001..825210(-) (dinR/lexA) [Streptomyces sp. WAC 01529]
GTGATCGACCACCTCACTGAGCGGCAGGAGCAGATCGTGAGGTGCATCCGCGAGTGGGTCGCGGAGAGGGGAGATTACCC
CTCGCTCAGCGAGATCGGCGGCTGTGTCGGCCTGTCCAGCAAATCGGCCGTGCACTACCAACTGCACCGGCTCGAAGCGC
GGGGCGTCGTGGTGCGGGAAGCGGGCCAGCCATACCGGCTGGCCTGGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45

86.957

0.391