Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CUC47_RS05185 Genome accession   NZ_CP024679
Coordinates   1099865..1100479 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain UMH15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094865..1105479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC47_RS05165 (CUC47_05245) - 1095235..1096995 (-) 1761 WP_094544804.1 AAA family ATPase -
  CUC47_RS05170 (CUC47_05250) matP 1097181..1097633 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  CUC47_RS05175 (CUC47_05255) ompA 1097722..1098780 (-) 1059 WP_003836839.1 porin OmpA -
  CUC47_RS05180 (CUC47_05260) sulA 1099138..1099647 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  CUC47_RS05185 (CUC47_05265) sxy/tfoX 1099865..1100479 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  CUC47_RS05190 (CUC47_05270) yccS 1100457..1102610 (-) 2154 WP_032939270.1 YccS family putative transporter -
  CUC47_RS05195 (CUC47_05275) - 1102629..1103075 (-) 447 WP_003035892.1 YccF domain-containing protein -
  CUC47_RS05200 (CUC47_05280) helD 1103201..1105255 (+) 2055 WP_121539886.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=254992 CUC47_RS05185 WP_003035889.1 1099865..1100479(+) (sxy/tfoX) [Citrobacter freundii strain UMH15]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=254992 CUC47_RS05185 WP_003035889.1 1099865..1100479(+) (sxy/tfoX) [Citrobacter freundii strain UMH15]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGCG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTAACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment