Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CUC49_RS04435 Genome accession   NZ_CP024676
Coordinates   955431..956045 (+) Length   204 a.a.
NCBI ID   WP_048212109.1    Uniprot ID   A0A9Q7ZQA3
Organism   Citrobacter pasteurii strain UMH17     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 950431..961045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC49_RS04415 (CUC49_04480) - 950803..952563 (-) 1761 WP_048212112.1 Lon protease family protein -
  CUC49_RS04420 (CUC49_04485) matP 952749..953201 (+) 453 WP_005123520.1 macrodomain Ter protein MatP -
  CUC49_RS04425 (CUC49_04490) ompA 953300..954349 (-) 1050 WP_048212110.1 porin OmpA -
  CUC49_RS04430 (CUC49_04495) sulA 954705..955214 (-) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  CUC49_RS04435 (CUC49_04500) sxy/tfoX 955431..956045 (+) 615 WP_048212109.1 TfoX/Sxy family DNA transformation protein Regulator
  CUC49_RS04440 (CUC49_04505) yccS 956023..958176 (-) 2154 WP_121584427.1 YccS family putative transporter -
  CUC49_RS04445 (CUC49_04510) - 958195..958641 (-) 447 WP_005123514.1 YccF domain-containing protein -
  CUC49_RS04450 (CUC49_04515) helD 958767..960821 (+) 2055 WP_121584428.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23336.10 Da        Isoelectric Point: 9.6920

>NTDB_id=254945 CUC49_RS04435 WP_048212109.1 955431..956045(+) (sxy/tfoX) [Citrobacter pasteurii strain UMH17]
MKKLSYARIYKSQEYLASLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQVN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=254945 CUC49_RS04435 WP_048212109.1 955431..956045(+) (sxy/tfoX) [Citrobacter pasteurii strain UMH17]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGCGTCATTGGGGACTATTCGTTATCGATCGCT
GTTTGGGGGTTATAGCCTGACGGTTGAGGACACGGTATTCGCCATGGTCGCCAGTGGCGAGTTATATCTTCGGGCCTGTG
AACAGAGTGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAATCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTCCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGGGCAAAAATGTGCTGGTTGAAACTGCGACAGGTTAAT
CCCGCCCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCAATTGGGGGAATTCATGAGGCGGCGCTCCCGGCGATTCG
TCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.637

98.529

0.716

Multiple sequence alignment