Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DL538_RS10060 Genome accession   NZ_CP029609
Coordinates   1979336..1979953 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1974336..1984953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS10030 (DL538_10005) yndJ 1974666..1976306 (+) 1641 WP_131227464.1 YndJ family protein -
  DL538_RS10035 (DL538_10010) - 1976384..1976698 (+) 315 WP_201757448.1 hypothetical protein -
  DL538_RS10040 (DL538_10015) pghL 1976922..1977680 (+) 759 WP_119899451.1 gamma-polyglutamate hydrolase PghL -
  DL538_RS10045 (DL538_10020) - 1977707..1978156 (-) 450 WP_003245454.1 YndM family protein -
  DL538_RS10050 (DL538_10025) fosM 1978364..1978798 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  DL538_RS22350 - 1978707..1979049 (+) 343 Protein_1924 hypothetical protein -
  DL538_RS10060 (DL538_10035) dinR/lexA 1979336..1979953 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  DL538_RS10065 (DL538_10040) yneA 1980103..1980420 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  DL538_RS10070 (DL538_10045) dinL 1980439..1981092 (+) 654 WP_015714011.1 recombinase family protein -
  DL538_RS10075 (DL538_10050) ynzC 1981156..1981389 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  DL538_RS10080 (DL538_10055) recP/tkt 1981558..1983561 (+) 2004 WP_014476936.1 transketolase Machinery gene
  DL538_RS10085 (DL538_10060) sirA 1983714..1984160 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  DL538_RS10090 (DL538_10065) yneF 1984246..1984464 (+) 219 WP_003221221.1 YneF family protein -
  DL538_RS10095 (DL538_10070) ynzD 1984538..1984711 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=254936 DL538_RS10060 WP_003238209.1 1979336..1979953(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain G7]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=254936 DL538_RS10060 WP_003238209.1 1979336..1979953(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain G7]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1