Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   DL538_RS08485 Genome accession   NZ_CP029609
Coordinates   1589144..1590166 (+) Length   340 a.a.
NCBI ID   WP_131227384.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1584144..1595166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS08450 (DL538_08430) ylbE 1584444..1584683 (+) 240 WP_003232231.1 YlbE-like family protein -
  DL538_RS08455 (DL538_08435) ylbF 1584799..1585248 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  DL538_RS08460 (DL538_08440) ylbG 1585303..1585575 (+) 273 WP_015715839.1 YlbG family protein -
  DL538_RS08465 (DL538_08445) rsmD 1585898..1586452 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DL538_RS08470 (DL538_08450) coaD 1586457..1586942 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  DL538_RS08475 (DL538_08455) spoVV 1586953..1588179 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  DL538_RS08480 (DL538_08460) ylbK 1588360..1589142 (+) 783 WP_003232221.1 patatin family protein -
  DL538_RS08485 (DL538_08465) sepM 1589144..1590166 (+) 1023 WP_131227384.1 protease DdcP Regulator
  DL538_RS08490 (DL538_08470) - 1590357..1590806 (-) 450 WP_128737830.1 hypothetical protein -
  DL538_RS08495 (DL538_08475) - 1590879..1592111 (-) 1233 WP_131227385.1 nucleotidyltransferase -
  DL538_RS08500 (DL538_08480) - 1592108..1592293 (-) 186 WP_131227386.1 hypothetical protein -
  DL538_RS08505 (DL538_08485) ylbN 1592321..1592839 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  DL538_RS08510 (DL538_08490) rpmF 1592861..1593040 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  DL538_RS08515 (DL538_08495) gerR 1593186..1593767 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  DL538_RS08520 (DL538_08500) ylbP 1593824..1594306 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37564.15 Da        Isoelectric Point: 6.5347

>NTDB_id=254922 DL538_RS08485 WP_131227384.1 1589144..1590166(+) (sepM) [Bacillus subtilis subsp. subtilis strain G7]
MLRKKHFSWMLIILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=254922 DL538_RS08485 WP_131227384.1 1589144..1590166(+) (sepM) [Bacillus subtilis subsp. subtilis strain G7]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCATCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGATGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCTGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(60-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.429

100

0.406