Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CUC51_RS05440 Genome accession   NZ_CP024673
Coordinates   1108857..1109471 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain UMH19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103857..1114471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC51_RS05420 (CUC51_05495) - 1104226..1105986 (-) 1761 WP_071697311.1 Lon protease family protein -
  CUC51_RS05425 (CUC51_05500) matP 1106172..1106624 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  CUC51_RS05430 (CUC51_05505) ompA 1106714..1107772 (-) 1059 WP_003836839.1 porin OmpA -
  CUC51_RS05435 (CUC51_05510) sulA 1108130..1108639 (-) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  CUC51_RS05440 (CUC51_05515) sxy/tfoX 1108857..1109471 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  CUC51_RS05445 (CUC51_05520) yccS 1109449..1111602 (-) 2154 WP_032941200.1 YccS family putative transporter -
  CUC51_RS05450 (CUC51_05525) - 1111621..1112067 (-) 447 WP_003035892.1 YccF domain-containing protein -
  CUC51_RS05455 (CUC51_05530) helD 1112193..1114247 (+) 2055 WP_071697312.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=254900 CUC51_RS05440 WP_003035889.1 1108857..1109471(+) (sxy/tfoX) [Citrobacter freundii strain UMH19]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=254900 CUC51_RS05440 WP_003035889.1 1108857..1109471(+) (sxy/tfoX) [Citrobacter freundii strain UMH19]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment