Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DL538_RS03390 Genome accession   NZ_CP029609
Coordinates   621130..621771 (+) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 616130..626771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS03360 (DL538_03350) ydfE 617325..617948 (-) 624 WP_041850747.1 flavin reductase family protein -
  DL538_RS03365 (DL538_03355) ydfF 618038..618718 (+) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  DL538_RS03370 (DL538_03360) ydfG 618798..619241 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  DL538_RS03375 (DL538_03365) - 619327..619506 (-) 180 WP_106074101.1 hypothetical protein -
  DL538_RS03380 (DL538_03370) - 619503..619646 (-) 144 WP_003243880.1 hypothetical protein -
  DL538_RS03385 (DL538_03375) ydfH 619914..621137 (+) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  DL538_RS03390 (DL538_03380) vraR 621130..621771 (+) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  DL538_RS03395 (DL538_03385) pleJ 621887..624061 (+) 2175 WP_131227146.1 MMPL family transporter -
  DL538_RS03400 (DL538_03390) cesA 624474..625376 (-) 903 WP_015715308.1 carboxylesterase -
  DL538_RS03405 (DL538_03395) ydfK 625579..626268 (-) 690 WP_131227147.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=254883 DL538_RS03390 WP_003234184.1 621130..621771(+) (vraR) [Bacillus subtilis subsp. subtilis strain G7]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=254883 DL538_RS03390 WP_003234184.1 621130..621771(+) (vraR) [Bacillus subtilis subsp. subtilis strain G7]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCTAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362