Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CUC52_RS04915 Genome accession   NZ_CP024672
Coordinates   1063575..1064189 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain HM38     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1058575..1069189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC52_RS04895 (CUC52_04965) - 1058942..1060702 (-) 1761 WP_003035878.1 Lon protease family protein -
  CUC52_RS04900 (CUC52_04970) matP 1060888..1061340 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  CUC52_RS04905 (CUC52_04975) ompA 1061432..1062490 (-) 1059 WP_003836839.1 porin OmpA -
  CUC52_RS04910 (CUC52_04980) sulA 1062848..1063357 (-) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  CUC52_RS04915 (CUC52_04985) sxy/tfoX 1063575..1064189 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  CUC52_RS04920 (CUC52_04990) yccS 1064167..1066320 (-) 2154 WP_032941200.1 YccS family putative transporter -
  CUC52_RS04925 (CUC52_04995) - 1066339..1066785 (-) 447 WP_003035892.1 YccF domain-containing protein -
  CUC52_RS04930 (CUC52_05000) helD 1066911..1068965 (+) 2055 WP_060854574.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=254877 CUC52_RS04915 WP_003035889.1 1063575..1064189(+) (sxy/tfoX) [Citrobacter freundii strain HM38]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=254877 CUC52_RS04915 WP_003035889.1 1063575..1064189(+) (sxy/tfoX) [Citrobacter freundii strain HM38]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment