Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CUB84_RS05050 Genome accession   NZ_CP024659
Coordinates   1092251..1092880 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RM9872-C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087251..1097880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUB84_RS05030 (CUB84_05380) ycbZ 1087638..1089398 (-) 1761 WP_000156509.1 Lon protease family protein -
  CUB84_RS05035 (CUB84_05385) matP 1089584..1090036 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CUB84_RS05040 (CUB84_05390) ompA 1090111..1091166 (-) 1056 WP_000750414.1 porin OmpA -
  CUB84_RS05045 (CUB84_05400) sulA 1091523..1092032 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CUB84_RS05050 (CUB84_05405) sxy/tfoX 1092251..1092880 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CUB84_RS05055 (CUB84_05410) yccS 1092843..1095005 (-) 2163 WP_000875041.1 YccS family putative transporter -
  CUB84_RS05060 (CUB84_05415) yccF 1095015..1095461 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CUB84_RS05065 (CUB84_05420) helD 1095584..1097638 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=254854 CUB84_RS05050 WP_000839153.1 1092251..1092880(+) (sxy/tfoX) [Escherichia coli strain RM9872-C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=254854 CUB84_RS05050 WP_000839153.1 1092251..1092880(+) (sxy/tfoX) [Escherichia coli strain RM9872-C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment