Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CSW12_RS20440 Genome accession   NZ_CP024655
Coordinates   3976247..3977041 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus cereus strain MLY1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3971247..3982041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW12_RS20415 (CSW12_20460) - 3972676..3972909 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  CSW12_RS20420 (CSW12_20465) - 3972959..3973687 (-) 729 WP_100910397.1 glycerophosphodiester phosphodiesterase -
  CSW12_RS20425 (CSW12_20470) - 3973738..3973884 (+) 147 WP_001247671.1 YycC family protein -
  CSW12_RS20430 (CSW12_20475) - 3974062..3975588 (-) 1527 WP_090977093.1 glycosyltransferase family 39 protein -
  CSW12_RS32460 - 3975795..3975907 (-) 113 Protein_3930 hypothetical protein -
  CSW12_RS20440 (CSW12_20485) spo0A 3976247..3977041 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  CSW12_RS20450 (CSW12_20495) spoIVB 3977329..3978627 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  CSW12_RS20455 (CSW12_20500) recN 3978746..3980485 (-) 1740 WP_000947734.1 DNA repair protein RecN Machinery gene
  CSW12_RS20460 (CSW12_20505) argR 3980750..3981199 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=254828 CSW12_RS20440 WP_011110369.1 3976247..3977041(-) (spo0A) [Bacillus cereus strain MLY1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=254828 CSW12_RS20440 WP_011110369.1 3976247..3977041(-) (spo0A) [Bacillus cereus strain MLY1]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAATGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGAGCAATTC
GTCACGCGATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment