Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CSW12_RS17860 Genome accession   NZ_CP024655
Coordinates   3484563..3484850 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain MLY1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3479563..3489850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW12_RS17830 (CSW12_17875) - 3479776..3480123 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  CSW12_RS17835 (CSW12_17880) - 3480208..3480432 (+) 225 WP_000162602.1 hypothetical protein -
  CSW12_RS17840 (CSW12_17885) - 3480727..3481902 (-) 1176 WP_097821626.1 MFS transporter -
  CSW12_RS17845 (CSW12_17890) - 3481950..3482885 (-) 936 WP_100910341.1 aldo/keto reductase -
  CSW12_RS17850 (CSW12_17895) - 3482992..3483300 (+) 309 WP_053564708.1 ArsR/SmtB family transcription factor -
  CSW12_RS17855 (CSW12_17900) - 3483340..3484287 (-) 948 WP_098284416.1 S8 family peptidase -
  CSW12_RS17860 (CSW12_17905) abrB 3484563..3484850 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CSW12_RS17865 (CSW12_17910) - 3484967..3486847 (-) 1881 WP_097924388.1 FtsX-like permease family protein -
  CSW12_RS17870 (CSW12_17915) nadE 3487122..3487940 (+) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  CSW12_RS17875 (CSW12_17920) - 3487985..3488446 (-) 462 WP_000024996.1 NUDIX hydrolase -
  CSW12_RS17880 (CSW12_17925) - 3488478..3488675 (-) 198 WP_001048104.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=254826 CSW12_RS17860 WP_000648324.1 3484563..3484850(-) (abrB) [Bacillus cereus strain MLY1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=254826 CSW12_RS17860 WP_000648324.1 3484563..3484850(-) (abrB) [Bacillus cereus strain MLY1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAGATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment