Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CSW12_RS05950 Genome accession   NZ_CP024655
Coordinates   1131411..1131734 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain MLY1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126411..1136734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW12_RS05925 (CSW12_05950) - 1126719..1128005 (+) 1287 WP_016513126.1 D-alanyl-D-alanine carboxypeptidase family protein -
  CSW12_RS05930 (CSW12_05955) sipW 1128196..1128765 (+) 570 WP_000767802.1 signal peptidase I SipW -
  CSW12_RS05935 (CSW12_05960) - 1128830..1129417 (+) 588 WP_100910006.1 CalY family protein -
  CSW12_RS05940 (CSW12_05965) - 1129552..1130358 (+) 807 WP_157812351.1 DUF4047 domain-containing protein -
  CSW12_RS05945 (CSW12_05970) calY 1130745..1131338 (+) 594 WP_000053715.1 biofilm matrix protein CalY -
  CSW12_RS05950 (CSW12_05975) sinR 1131411..1131734 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  CSW12_RS05955 (CSW12_05980) - 1131814..1131948 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  CSW12_RS05960 (CSW12_05985) inhA1 1132291..1134678 (+) 2388 WP_061660516.1 M6 family metalloprotease immune inhibitor InhA1 -
  CSW12_RS05965 (CSW12_05990) - 1134850..1136217 (+) 1368 WP_100910008.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=254817 CSW12_RS05950 WP_000578885.1 1131411..1131734(-) (sinR) [Bacillus cereus strain MLY1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=254817 CSW12_RS05950 WP_000578885.1 1131411..1131734(-) (sinR) [Bacillus cereus strain MLY1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment