Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DLM49_RS24245 Genome accession   NZ_CP029601
Coordinates   5436790..5437506 (-) Length   238 a.a.
NCBI ID   WP_240661301.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01438     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5431790..5442506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM49_RS24240 (DLM49_24300) - 5436103..5436744 (+) 642 WP_125506430.1 DUF1453 family protein -
  DLM49_RS24245 (DLM49_24305) vraR 5436790..5437506 (-) 717 WP_240661301.1 response regulator transcription factor Regulator
  DLM49_RS24250 (DLM49_24310) - 5437682..5439430 (-) 1749 WP_125506431.1 fatty acyl-AMP ligase -
  DLM49_RS24255 (DLM49_24315) - 5439447..5441105 (-) 1659 WP_240661302.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25394.83 Da        Isoelectric Point: 5.1469

>NTDB_id=254732 DLM49_RS24245 WP_240661301.1 5436790..5437506(-) (vraR) [Streptomyces sp. WAC 01438]
MSTTERTAGPVRVLVVDDQQLVREGLMSLLDLMDDIEVVGGASDGVEAVRLVAETAPQVVLMDLRMPRMGGAEATARILA
DHPDVAVLALSTYADDESIAAALNAGARGYLTKDANREQIAMAIHNSTHGQSTFDPTVTRRLAAALAAPAPPPPADPGPA
PTAKERPRRRVFPDGLTNREAEVLRLIAEGLSNAEIASSLFIEETTVKTHINNAFAKIDARNRADAVRYAFQKGLARP

Nucleotide


Download         Length: 717 bp        

>NTDB_id=254732 DLM49_RS24245 WP_240661301.1 5436790..5437506(-) (vraR) [Streptomyces sp. WAC 01438]
GTGAGCACGACGGAACGGACGGCCGGGCCGGTTCGGGTGCTGGTCGTCGACGACCAGCAACTGGTCCGCGAGGGGCTGAT
GTCCCTGCTGGATCTGATGGACGACATCGAGGTCGTCGGCGGCGCCTCGGACGGTGTCGAGGCGGTGCGGCTGGTGGCGG
AGACCGCCCCGCAGGTGGTGCTGATGGATCTGCGGATGCCGAGAATGGGCGGCGCGGAGGCGACCGCGCGCATCCTCGCC
GACCACCCGGACGTGGCGGTGCTCGCGCTGTCCACCTACGCCGACGACGAGTCGATCGCGGCCGCGCTGAACGCGGGGGC
GCGCGGCTATCTCACCAAGGACGCCAACCGCGAGCAGATCGCCATGGCGATCCACAACTCCACCCACGGGCAGTCCACGT
TCGACCCGACGGTCACCCGCCGGCTCGCGGCCGCGCTCGCCGCGCCGGCGCCCCCGCCGCCCGCCGACCCCGGCCCGGCG
CCCACGGCGAAGGAGCGGCCCCGCCGGCGGGTCTTCCCGGACGGTCTGACCAACCGGGAGGCCGAGGTGCTGCGGCTGAT
CGCCGAGGGGCTGAGCAACGCGGAGATCGCCTCCTCGCTGTTCATCGAGGAGACGACCGTCAAGACGCACATCAACAACG
CGTTCGCCAAGATCGACGCGCGCAACCGGGCGGACGCGGTGCGCTACGCGTTCCAGAAAGGACTGGCCCGGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(13-124)

Bacterial regulatory proteins, luxR family (GerE)

(175-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.719

95.798

0.361

Multiple sequence alignment