Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CS547_RS01980 Genome accession   NZ_CP024647
Coordinates   391966..392919 (+) Length   317 a.a.
NCBI ID   WP_099984424.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lzh-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386966..397919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS547_RS01955 (CS547_01955) - 387009..388436 (+) 1428 WP_089072406.1 HAMP domain-containing sensor histidine kinase -
  CS547_RS01960 (CS547_01960) rapC 388595..389743 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  CS547_RS01965 (CS547_01965) phrC 389727..389846 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  CS547_RS01970 (CS547_01970) - 389998..390108 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  CS547_RS01975 (CS547_01975) - 390188..391552 (-) 1365 WP_021495117.1 aspartate kinase -
  CS547_RS01980 (CS547_01980) ceuB 391966..392919 (+) 954 WP_099984424.1 ABC transporter permease Machinery gene
  CS547_RS01985 (CS547_01985) - 392909..393856 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  CS547_RS01990 (CS547_01990) - 393850..394608 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  CS547_RS01995 (CS547_01995) - 394630..395574 (+) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  CS547_RS02000 (CS547_02000) - 395616..397040 (-) 1425 WP_017419270.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34943.26 Da        Isoelectric Point: 9.7101

>NTDB_id=254711 CS547_RS01980 WP_099984424.1 391966..392919(+) (ceuB) [Bacillus velezensis strain Lzh-5]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLFMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=254711 CS547_RS01980 WP_099984424.1 391966..392919(+) (ceuB) [Bacillus velezensis strain Lzh-5]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAATTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTGCTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTTTATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.43

99.685

0.543

Multiple sequence alignment