Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | CS547_RS00250 | Genome accession | NZ_CP024647 |
| Coordinates | 45632..45922 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain Lzh-5 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 40632..50922
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS547_RS00210 (CS547_00210) | darA | 40649..40978 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| CS547_RS00215 (CS547_00215) | - | 40991..41431 (+) | 441 | WP_004264730.1 | YaaR family protein | - |
| CS547_RS00220 (CS547_00220) | holB | 41443..42432 (+) | 990 | WP_007409919.1 | DNA polymerase III subunit delta' | - |
| CS547_RS00225 (CS547_00225) | ricT | 42435..43262 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| CS547_RS00230 (CS547_00230) | yabA | 43277..43636 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| CS547_RS00235 (CS547_00235) | - | 43697..44440 (+) | 744 | WP_022552468.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| CS547_RS00240 (CS547_00240) | - | 44427..44726 (+) | 300 | WP_022552469.1 | GIY-YIG nuclease family protein | - |
| CS547_RS00245 (CS547_00245) | rsmI | 44701..45582 (+) | 882 | WP_022552470.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| CS547_RS00250 (CS547_00250) | abrB | 45632..45922 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| CS547_RS00255 (CS547_00255) | metG | 46405..48396 (+) | 1992 | WP_022552471.1 | methionine--tRNA ligase | - |
| CS547_RS00260 (CS547_00260) | - | 48473..49240 (+) | 768 | WP_032864028.1 | TatD family hydrolase | - |
| CS547_RS00265 (CS547_00265) | - | 49375..50700 (+) | 1326 | WP_023356663.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=254703 CS547_RS00250 WP_169510469.1 45632..45922(-) (abrB) [Bacillus velezensis strain Lzh-5]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=254703 CS547_RS00250 WP_169510469.1 45632..45922(-) (abrB) [Bacillus velezensis strain Lzh-5]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |