Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CS547_RS00020 Genome accession   NZ_CP024647
Coordinates   3116..4228 (+) Length   370 a.a.
NCBI ID   WP_022552462.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lzh-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS547_RS00005 (CS547_00005) dnaA 89..1429 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  CS547_RS00010 (CS547_00010) dnaN 1614..2750 (+) 1137 WP_021494589.1 DNA polymerase III subunit beta -
  CS547_RS00015 (CS547_00015) rlbA 2885..3100 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  CS547_RS00020 (CS547_00020) recF 3116..4228 (+) 1113 WP_022552462.1 DNA replication/repair protein RecF Machinery gene
  CS547_RS00025 (CS547_00025) remB 4246..4491 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  CS547_RS00030 (CS547_00030) gyrB 4548..6464 (+) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CS547_RS00035 (CS547_00035) gyrA 6680..9139 (+) 2460 WP_014416706.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42416.34 Da        Isoelectric Point: 7.0881

>NTDB_id=254701 CS547_RS00020 WP_022552462.1 3116..4228(+) (recF) [Bacillus velezensis strain Lzh-5]
MYIQNLDLTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=254701 CS547_RS00020 WP_022552462.1 3116..4228(+) (recF) [Bacillus velezensis strain Lzh-5]
TTGTATATCCAAAATTTAGATTTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCTATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941

Multiple sequence alignment