Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPZ87_RS28375 Genome accession   NZ_CP024645
Coordinates   6185708..6187063 (+) Length   451 a.a.
NCBI ID   WP_085753797.1    Uniprot ID   A0A1W6LGU2
Organism   Piscinibacter gummiphilus strain NBRC 109400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6180708..6192063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ87_RS28345 (CPZ87_28340) - 6180907..6181404 (-) 498 WP_085753792.1 glutathione peroxidase -
  CPZ87_RS28350 (CPZ87_28345) - 6181505..6182311 (+) 807 WP_085753793.1 response regulator -
  CPZ87_RS28355 (CPZ87_28350) - 6182396..6182716 (+) 321 WP_085753794.1 hypothetical protein -
  CPZ87_RS28360 (CPZ87_28355) lplT 6182756..6184033 (-) 1278 WP_085753795.1 lysophospholipid transporter LplT -
  CPZ87_RS28365 (CPZ87_28360) alr 6184193..6185293 (+) 1101 WP_085753796.1 alanine racemase -
  CPZ87_RS28370 (CPZ87_28365) arfB 6185290..6185685 (+) 396 WP_085754362.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  CPZ87_RS28375 (CPZ87_28370) radA 6185708..6187063 (+) 1356 WP_085753797.1 DNA repair protein RadA Machinery gene
  CPZ87_RS28380 (CPZ87_28375) - 6187170..6187424 (+) 255 WP_085753798.1 FeoA family protein -
  CPZ87_RS28385 (CPZ87_28380) - 6187421..6189280 (+) 1860 WP_085753799.1 ferrous iron transporter B -
  CPZ87_RS28390 (CPZ87_28385) - 6189312..6189578 (+) 267 WP_085753800.1 DUF6587 family protein -
  CPZ87_RS28395 (CPZ87_28390) - 6189637..6190056 (+) 420 WP_085753801.1 hypothetical protein -
  CPZ87_RS28400 (CPZ87_28395) - 6190101..6191024 (+) 924 WP_085753802.1 branched-chain amino acid transaminase -
  CPZ87_RS28405 (CPZ87_28400) - 6191030..6191248 (+) 219 WP_085753803.1 zinc-finger domain-containing protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47617.87 Da        Isoelectric Point: 7.0603

>NTDB_id=254698 CPZ87_RS28375 WP_085753797.1 6185708..6187063(+) (radA) [Piscinibacter gummiphilus strain NBRC 109400]
MAKDKSIYTCTDCGATSPKWLGKCPGCGAWNTLTESVAESPSKHRYQSLAAAQPVTTLSEIEATDVDRQPTGIDELDRVL
GGGIVAGGVVLIGGDPGIGKSTLLLQALDTLSKTVRTLYVTGEESGAQVALRSRRLGLDGSQVRVIAEIQLEKISATIAA
EQPAVCVIDSIQTMYSDQLTSAPGSVAQVRECAAQLTRIAKSSGTAIILVGHVTKEGALAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSTHGDPVPGACVLVTLEGTRPMLVEVQALVDSGGPSPRRL
SVGLDRDRLAMMLAVMHRHAGIACMDQDVFVNAVGGVRISEPAGDLAVMLSIQSSLRGKPLPRGFFAFGEVGLAGEVRPA
PRGQERLKEAAKLGFSVAVVPKANVPKKPIEGLTIYPVERIEEAVDRVREL

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=254698 CPZ87_RS28375 WP_085753797.1 6185708..6187063(+) (radA) [Piscinibacter gummiphilus strain NBRC 109400]
ATGGCCAAGGACAAATCGATCTACACCTGCACCGACTGCGGTGCCACGAGCCCCAAGTGGCTCGGCAAGTGCCCCGGCTG
CGGCGCCTGGAACACGCTGACCGAGTCGGTCGCCGAATCCCCCTCGAAACACCGCTACCAGTCGCTCGCCGCGGCGCAGC
CGGTCACCACGCTCTCCGAGATCGAGGCCACCGACGTCGACCGCCAGCCCACCGGCATCGACGAACTCGACCGCGTGCTG
GGCGGCGGCATCGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTCGACACCCTCTCGAAGACGGTGCGCACGCTGTACGTCACGGGCGAGGAATCGGGCGCCCAGGTGGCGCTGCGCTCGC
GCCGCCTCGGGCTCGACGGCTCGCAGGTGCGGGTCATCGCCGAGATCCAGCTGGAGAAGATCTCCGCCACCATCGCGGCC
GAGCAGCCCGCCGTGTGCGTGATCGACTCCATCCAGACGATGTACAGCGACCAGCTCACCTCCGCCCCCGGCTCGGTGGC
CCAGGTGCGCGAATGCGCGGCCCAGCTCACGCGCATCGCGAAGAGTTCGGGCACGGCCATCATCCTCGTGGGCCACGTCA
CCAAGGAAGGGGCGCTGGCCGGCCCCCGCGTGCTGGAGCACATCGTCGACACCGTGCTCTATTTCGAGGGCGACACCCAT
TCCAGCTTCCGCCTCGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGCGATGACCGAGAA
GGGCTTGAAGGGCGTGGCCAACCCGAGCGCCATCTTCCTGTCCACCCATGGCGACCCCGTCCCGGGCGCCTGCGTGCTCG
TCACGCTCGAGGGCACCCGGCCCATGCTCGTGGAGGTGCAGGCCCTGGTCGACAGCGGCGGCCCCAGCCCCCGGCGCCTG
AGCGTGGGCCTCGACCGCGACCGGCTCGCGATGATGCTGGCCGTGATGCACCGCCACGCCGGCATCGCCTGCATGGACCA
GGACGTGTTCGTCAATGCGGTGGGCGGCGTGCGCATCAGCGAACCGGCGGGCGACCTCGCCGTGATGCTGTCCATCCAGA
GCAGCCTGCGCGGCAAGCCGCTGCCCCGGGGGTTCTTCGCCTTCGGCGAGGTGGGCCTGGCCGGGGAGGTGCGGCCGGCC
CCCCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTCAGCGTCGCGGTGGTGCCGAAGGCCAACGTGCCCAA
GAAGCCCATCGAGGGCCTGACCATCTACCCGGTGGAGCGGATCGAGGAGGCGGTGGACCGGGTGCGCGAACTTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(59-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6LGU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.565

100

0.488
  radA Streptococcus mitis NCTC 12261

46.711

100

0.472
  radA Streptococcus mitis SK321

46.916

100

0.472
  radA Streptococcus pneumoniae TIGR4

47.836

97.339

0.466
  radA Streptococcus pneumoniae R6

47.836

97.339

0.466
  radA Streptococcus pneumoniae Rx1

47.836

97.339

0.466
  radA Streptococcus pneumoniae D39

47.836

97.339

0.466

Multiple sequence alignment