Detailed information NTG0254689

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: CPZ87_RS24280
• Genome accession: NZ_CP024645
• Coordinates: 5308745..5309968 (-)
• Length: 407 a.a.
• NCBI ID: WP_085753057.1
• Uniprot ID: A0A1W6LER5
• Organism: Piscinibacter gummiphilus strain NBRC 109400
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5303745..5314968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPZ87_RS24260 (CPZ87_24255)	-	5304781..5305047 (-)	267	WP_085753053.1	PP0621 family protein	-
CPZ87_RS24265 (CPZ87_24260)	-	5305065..5305907 (-)	843	WP_085753054.1	inner membrane protein YpjD	-
CPZ87_RS24270 (CPZ87_24265)	ffh	5305956..5307326 (+)	1371	WP_085753055.1	signal recognition particle protein	-
CPZ87_RS24275 (CPZ87_24270)	-	5307412..5308149 (+)	738	WP_085753056.1	DUF2726 domain-containing protein	-
CPZ87_RS24280 (CPZ87_24275)	pilA	5308745..5309968 (-)	1224	WP_085753057.1	signal recognition particle-docking protein FtsY	Machinery gene
CPZ87_RS24290 (CPZ87_24285)	-	5310163..5311077 (-)	915	WP_085753058.1	NmrA family NAD(P)-binding protein	-
CPZ87_RS29895 (CPZ87_24290)	-	5311223..5313862 (-)	2640	WP_085753059.1	LuxR C-terminal-related transcriptional regulator	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 42318.68 Da
• Isoelectric Point: 5.1793

>NTDB_id=254689 CPZ87_RS24280 WP_085753057.1 5308745..5309968(-) (pilA) [Piscinibacter gummiphilus strain NBRC 109400]
MFSFFKKKSPPSDAPPAAAPAVDTGEEKRSWVDRLRSGIGLGDTPVEATPAPAPAPAAPVIPAPAPAPVVAAPVPVQAPA
PVPVPAPVPAEPPVSAEAVAERRTWLDKLRTGLRKTGSSITQVFTGTQIDDALYEDLEAALLMADAGVKATEFLLKDLKW
RVKEAKATDPAAVKGLLADAITDLLAPLEKPLEIGEATPTVMMVVGVNGAGKTTSIGKLTRHLADGGQKVLLAAADTFRA
AAREQLAVWADRADKPGAPAVAVEIVSQESGDPSSVSFDAVVAGKSRGCDVVIADTAGRLPTQLHLMEELKKIKRVIGKA
QDGAPHEVLLVVDGNTGQNALQQVKAFDDALQLTGLIITKLDGTAKGGVLAAIARERPVPVYFVGVGEKLEDLQTFSARE
FAQAVLS

Nucleotide

• Length: 1224 bp

>NTDB_id=254689 CPZ87_RS24280 WP_085753057.1 5308745..5309968(-) (pilA) [Piscinibacter gummiphilus strain NBRC 109400]
ATGTTCAGTTTTTTCAAGAAGAAATCCCCCCCGTCCGACGCGCCGCCGGCCGCCGCGCCCGCCGTCGACACGGGGGAGGA
GAAGCGCAGCTGGGTCGACCGGCTGCGCAGTGGCATCGGACTGGGGGACACGCCCGTCGAGGCCACGCCCGCGCCCGCGC
CTGCGCCGGCCGCCCCCGTCATTCCGGCGCCGGCCCCCGCGCCCGTGGTCGCTGCGCCGGTCCCGGTTCAGGCCCCGGCT
CCGGTTCCGGTTCCGGCACCCGTGCCCGCCGAACCACCGGTGTCCGCCGAAGCCGTGGCCGAACGCCGCACCTGGCTCGA
CAAGCTGCGCACCGGGCTGCGCAAGACCGGCTCCAGCATCACGCAGGTGTTCACCGGCACGCAGATCGACGATGCCCTCT
ATGAAGACCTCGAGGCCGCGCTGCTCATGGCGGACGCCGGCGTCAAGGCCACGGAGTTCCTGCTGAAGGACCTGAAGTGG
CGGGTGAAGGAGGCGAAGGCCACCGACCCGGCCGCGGTGAAGGGGCTGCTGGCCGATGCCATCACCGACCTGCTGGCGCC
CCTCGAGAAGCCGCTCGAGATCGGCGAGGCCACGCCCACCGTGATGATGGTGGTGGGGGTCAACGGTGCCGGCAAGACGA
CGAGCATCGGCAAGCTCACGCGCCATCTGGCCGACGGCGGTCAGAAGGTGTTGCTGGCTGCGGCCGACACGTTCCGCGCC
GCCGCCCGCGAGCAGCTCGCGGTGTGGGCCGACCGCGCCGACAAGCCGGGTGCGCCGGCCGTGGCGGTGGAGATCGTGTC
GCAGGAAAGCGGCGATCCGTCGTCGGTGAGCTTCGATGCCGTGGTGGCGGGCAAGTCCCGCGGCTGCGACGTGGTGATCG
CCGACACCGCGGGCCGCCTGCCCACGCAGCTCCACCTGATGGAGGAGCTGAAGAAGATCAAGCGCGTGATCGGCAAGGCC
CAGGACGGGGCGCCGCACGAGGTGCTGCTGGTGGTCGACGGCAACACCGGGCAAAACGCGCTGCAGCAGGTCAAGGCGTT
CGACGATGCGCTTCAGCTCACCGGGCTGATCATCACGAAGCTCGATGGCACGGCGAAGGGTGGGGTGCTGGCGGCCATCG
CGCGCGAGCGGCCCGTCCCGGTGTACTTCGTGGGCGTGGGTGAGAAGCTGGAAGACCTGCAGACCTTCAGCGCGCGTGAG
TTCGCCCAGGCCGTCCTGAGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (117-180)

• SRP54-type protein, GTPase domain (SRP54) (199-406)

3D structure

• AlphaFold DB: A0A1W6LER5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	46.136	100	0.484