Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DLJ64_RS20060 Genome accession   NZ_CP029579
Coordinates   3869378..3869893 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain DA33137     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3864378..3874893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ64_RS20015 (DLJ64_20015) csrA 3865131..3865316 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DLJ64_RS20045 (DLJ64_20045) yqaB 3866608..3867174 (+) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DLJ64_RS20050 (DLJ64_20050) yqaA 3867171..3867599 (+) 429 WP_001287454.1 YqaA family protein -
  DLJ64_RS20055 (DLJ64_20055) gshA 3867672..3869228 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  DLJ64_RS20060 (DLJ64_20060) luxS 3869378..3869893 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DLJ64_RS20065 (DLJ64_20065) emrB 3869957..3871495 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DLJ64_RS20070 (DLJ64_20070) emrA 3871512..3872684 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DLJ64_RS20075 (DLJ64_20075) emrR 3872811..3873341 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DLJ64_RS20080 (DLJ64_20080) ygaH 3873432..3873767 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  DLJ64_RS20085 (DLJ64_20085) ygaZ 3873757..3874494 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=254658 DLJ64_RS20060 WP_001130211.1 3869378..3869893(+) (luxS) [Escherichia coli strain DA33137]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=254658 DLJ64_RS20060 WP_001130211.1 3869378..3869893(+) (luxS) [Escherichia coli strain DA33137]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731