Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CT113_RS05700 Genome accession   NZ_CP024635
Coordinates   1063382..1064758 (-) Length   458 a.a.
NCBI ID   WP_024525645.1    Uniprot ID   A0A1X0XL19
Organism   Levilactobacillus brevis strain BDGP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1058382..1069758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT113_RS05680 (CT113_05680) - 1058434..1058841 (-) 408 WP_011667352.1 Mini-ribonuclease 3 -
  CT113_RS05685 (CT113_05685) cysS 1058841..1060253 (-) 1413 WP_024525644.1 cysteine--tRNA ligase -
  CT113_RS05690 (CT113_05690) gltX 1060408..1061898 (-) 1491 WP_011667350.1 glutamate--tRNA ligase -
  CT113_RS05695 (CT113_05695) - 1062162..1063346 (-) 1185 WP_021741476.1 PIN/TRAM domain-containing protein -
  CT113_RS05700 (CT113_05700) radA 1063382..1064758 (-) 1377 WP_024525645.1 DNA repair protein RadA Machinery gene
  CT113_RS05705 (CT113_05705) - 1064853..1065392 (-) 540 WP_024525646.1 dUTP diphosphatase -
  CT113_RS05710 (CT113_05710) - 1065571..1065912 (+) 342 WP_024525647.1 hypothetical protein -
  CT113_RS05715 (CT113_05715) rpiA 1065920..1066606 (+) 687 WP_011667345.1 ribose-5-phosphate isomerase RpiA -
  CT113_RS14355 - 1066717..1066887 (-) 171 WP_164475118.1 hypothetical protein -
  CT113_RS05720 (CT113_05720) - 1067033..1068367 (+) 1335 WP_024525648.1 aminopeptidase C -
  CT113_RS05725 (CT113_05725) - 1068502..1069734 (-) 1233 WP_024525649.1 serine hydrolase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49788.09 Da        Isoelectric Point: 7.0881

>NTDB_id=254644 CT113_RS05700 WP_024525645.1 1063382..1064758(-) (radA) [Levilactobacillus brevis strain BDGP6]
MAKPRTTYVCQNCDYSSPRYLGRCPNCGEWNTMVEEVVTPAAAKPQSTRTTASGERSHPQLMSEIKHSTESRTKTQMEEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSQTGGKVLYVSGEESASQIKMRADRLVVNSDHLYLYPETDMASIR
ANIEQMKPDYVVIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRAVKNRFGSTNELGIFEMREGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPSVF
GNAQRTSSGLDRNRVSLLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIALSIASSYRDTATQPTDCFVGEVGLT
GEIRRVNRIEQRVAEAKKLGFKRIFIPKNNLQGWTPDPGIDVVGVSTLRQTLKLALDV

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=254644 CT113_RS05700 WP_024525645.1 1063382..1064758(-) (radA) [Levilactobacillus brevis strain BDGP6]
GTGGCGAAACCAAGAACAACGTATGTGTGTCAAAATTGTGATTATAGCTCACCCCGTTATTTGGGGCGTTGTCCCAATTG
TGGTGAGTGGAACACGATGGTGGAAGAAGTCGTCACACCGGCTGCCGCCAAGCCACAATCAACCCGGACCACTGCTTCCG
GAGAACGGTCACACCCACAACTCATGAGTGAGATTAAACACTCAACGGAAAGCCGAACGAAGACGCAAATGGAAGAACTG
AACCGAGTGTTGGGTGGGGGAATTGTACCGGGATCTTTGATCCTAATCGGTGGTGATCCTGGAATTGGAAAATCAACCCT
CTTGCTTCAAGTATCGGGGCAACTCAGCCAAACAGGCGGTAAAGTGTTGTATGTTTCTGGAGAAGAAAGTGCGTCACAGA
TTAAAATGCGGGCGGATCGGTTAGTCGTCAATAGCGACCACTTGTATCTTTATCCAGAAACTGATATGGCCAGTATTCGC
GCGAACATTGAACAGATGAAACCTGATTACGTGGTCATTGATTCCGTTCAGACCATGCAGGCGCCGGGAATCGAGTCGGC
GATTGGTTCGGTCTCACAAATTCGTGCGGTCACTGGTGAGCTGATGCAGATTGCCAAAACCAATGGCATCACTATTTTTG
TGGTGGGGCATGTGACGAAGGGCGGCGCAATTGCCGGTCCTAAGATTCTGGAACACATGGTAGATACGGTTCTTTACTTT
GAAGGTGACCTCCATCATACGTACCGAATTCTCCGAGCGGTCAAGAACCGATTCGGGTCAACGAATGAACTGGGTATCTT
TGAAATGCGTGAAGGTGGCTTGTATGAAGTTGCTAATCCGTCAGAAATTTTCTTGGAGGAACGATTGAAGGACGCAACCG
GTTCGGCCATTGTGGTATCAATGGAAGGTACGCGGCCAATTTTGGTAGAAGTTCAGGCGTTAATTACACCATCGGTCTTT
GGTAATGCGCAACGCACATCCAGCGGCCTGGATCGTAATCGGGTGTCGTTGTTGATGGCTGTGCTAGAAAAACGGGCCAA
TCTAATGCTCCAAAATCAAGATGCATTTTTAAAGGCAGCAGGTGGCGTTAAGCTGGATGAACCGGCGATTGATTTGGCAA
TTGCACTGTCGATTGCATCGAGTTATCGCGATACGGCCACGCAGCCAACGGATTGTTTTGTCGGTGAAGTTGGCCTGACT
GGTGAAATCCGTCGGGTTAATCGAATTGAACAACGGGTTGCGGAAGCGAAAAAACTGGGCTTTAAGCGGATCTTCATTCC
CAAGAATAACCTTCAAGGGTGGACGCCCGATCCCGGAATTGATGTGGTCGGCGTGTCAACGTTACGACAAACGTTAAAAC
TGGCTTTGGACGTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0XL19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

66.667

98.908

0.659
  radA Streptococcus mitis NCTC 12261

66.446

98.908

0.657
  radA Streptococcus pneumoniae Rx1

66.446

98.908

0.657
  radA Streptococcus pneumoniae D39

66.446

98.908

0.657
  radA Streptococcus pneumoniae R6

66.446

98.908

0.657
  radA Streptococcus pneumoniae TIGR4

66.446

98.908

0.657
  radA Bacillus subtilis subsp. subtilis str. 168

64.035

99.563

0.638

Multiple sequence alignment