Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CT113_RS00240 Genome accession   NZ_CP024635
Coordinates   54426..56231 (+) Length   601 a.a.
NCBI ID   WP_024526731.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain BDGP6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 49426..61231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT113_RS00215 (CT113_00215) - 49615..50349 (+) 735 WP_024526727.1 ABC transporter ATP-binding protein -
  CT113_RS00220 (CT113_00220) - 50346..51572 (+) 1227 WP_024526728.1 ABC transporter permease -
  CT113_RS00225 (CT113_00225) - 51634..52425 (+) 792 WP_024526729.1 phosphotransferase family protein -
  CT113_RS00230 (CT113_00230) trmB 52491..53138 (+) 648 WP_015473913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CT113_RS00235 (CT113_00235) - 53265..54359 (+) 1095 WP_024526730.1 competence protein CoiA -
  CT113_RS00240 (CT113_00240) pepF 54426..56231 (+) 1806 WP_024526731.1 oligoendopeptidase F Regulator
  CT113_RS00245 (CT113_00245) - 56285..57148 (-) 864 WP_024526732.1 DegV family protein -
  CT113_RS00250 (CT113_00250) - 57309..57947 (-) 639 WP_024526733.1 ClpXP adapter SpxH family protein -
  CT113_RS00255 (CT113_00255) - 58261..58920 (+) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  CT113_RS00260 (CT113_00260) - 58922..59725 (+) 804 WP_021740943.1 NAD kinase -
  CT113_RS00265 (CT113_00265) - 59722..60621 (+) 900 WP_024526734.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67075.09 Da        Isoelectric Point: 4.8272

>NTDB_id=254629 CT113_RS00240 WP_024526731.1 54426..56231(+) (pepF) [Levilactobacillus brevis strain BDGP6]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKAQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNEHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLEGLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=254629 CT113_RS00240 WP_024526731.1 54426..56231(+) (pepF) [Levilactobacillus brevis strain BDGP6]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAAGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAACAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCGGTTGTTCA
AGACGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAACAATGTGCCAGCAGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGAGCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAATTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGGACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAGGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAAACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCCACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCAGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGCATGAATTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491

Multiple sequence alignment