Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   CS557_RS14625 Genome accession   NZ_CP024632
Coordinates   3111021..3112172 (+) Length   383 a.a.
NCBI ID   WP_004905510.1    Uniprot ID   S7XRZ8
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3106021..3117172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS14605 (CS557_14610) - 3106933..3107694 (+) 762 WP_004905498.1 hypothetical protein -
  CS557_RS14610 (CS557_14615) - 3107741..3109837 (-) 2097 WP_099949357.1 TonB-dependent copper receptor -
  CS557_RS14615 (CS557_14620) - 3109911..3110348 (-) 438 WP_039048136.1 DUF2946 family protein -
  CS557_RS14620 (CS557_14625) def 3110370..3110900 (-) 531 WP_004905508.1 peptide deformylase -
  CS557_RS14625 (CS557_14630) tsaP 3111021..3112172 (+) 1152 WP_004905510.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CS557_RS14630 (CS557_14635) dprA 3112182..3113309 (+) 1128 WP_099949358.1 DNA-processing protein DprA Machinery gene
  CS557_RS14635 (CS557_14640) - 3113347..3113916 (+) 570 WP_099949359.1 Sua5/YciO/YrdC/YwlC family protein -
  CS557_RS14640 (CS557_14645) - 3114311..3115231 (-) 921 WP_099949360.1 DMT family transporter -
  CS557_RS14645 (CS557_14650) - 3115335..3116000 (-) 666 WP_412778891.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41829.95 Da        Isoelectric Point: 9.0745

>NTDB_id=254607 CS557_RS14625 WP_004905510.1 3111021..3112172(+) (tsaP) [Acinetobacter junii strain lzh-X15]
MKKVLNGIHSFHALGLKKQLIAVAICAGLGMTVNITHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGGGTTLRPQVRIEALNNSVPVIPLAHIQQWLER
SSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVYREGEPYIVVDEQGKKQNLGVELLQVASGVAVRN
ENDITTVELTDSYNGEVRRGDRVMLEQEAMLPTLFYPIDAKQVRDGGKVIRVLGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYQEGEIVQDPKTKEKVKLPGQYVGSLMIFKSFDRISYAYVLESELPIKVGSNIQPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=254607 CS557_RS14625 WP_004905510.1 3111021..3112172(+) (tsaP) [Acinetobacter junii strain lzh-X15]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGTTGCCATCTGTGC
AGGATTAGGCATGACGGTAAATATAACGCATGCAGCAAGCCCTAATGTTAGCCCACCCTCTGTCAAAGCTGGGGCACCAC
ATGTCTATGTAGTGAAAAAAGGCGATACCCTTTGGGATATCTCAGGCAAGTTTTTAAGTAAACCATGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACACGTTAAGAATCCTCACTGGATTTATCCAGGTGACCGTTTACTACTCTGTAGTTTGAATGG
CAAACCGTTAATCGGTAAAGATGAAGGTGACGGCTGTGACGGTATTATTCGTCGTTATACAGGTGGCGGAACAACTTTAC
GTCCGCAAGTACGTATTGAAGCATTGAACAATAGTGTGCCAGTTATTCCATTGGCTCATATTCAACAATGGTTAGAACGT
AGTTCAGTATTACCAGCGGATGCGATTGCGAATACCCCTTATATCTTAGGCACAGCTGACAATCGCGTACTTGCAGGCAA
AGGGCAAAGTGTTTACGTTCGTGGTCAAGGTCTAGAAAATGGTCAGCGTTATGGCGTTTACCGTGAAGGTGAACCTTACA
TCGTTGTCGATGAGCAAGGCAAAAAACAAAACCTAGGTGTTGAATTACTTCAAGTCGCATCTGGTGTTGCTGTGCGCAAT
GAAAACGACATTACAACGGTTGAACTCACTGATAGCTATAACGGCGAAGTTCGTCGTGGTGATCGCGTGATGCTTGAACA
AGAGGCAATGTTGCCAACCTTGTTCTATCCTATCGATGCAAAACAAGTGCGCGATGGCGGTAAAGTGATTCGTGTATTAG
GATCGATTGGTACAGCCGCAAAAAATGGTGTTGTCACTGTTGATCGCGGTACTGCTGATGGCGTTGAAATTGGTCAAGTC
TTTAGCACTTACCAAGAGGGTGAGATCGTACAAGATCCAAAAACTAAAGAGAAAGTTAAATTACCTGGACAATATGTGGG
TAGCTTGATGATCTTCAAGAGTTTTGATCGTATCAGCTATGCCTACGTTTTAGAAAGTGAACTACCAATCAAGGTCGGTT
CAAACATCCAACCACCACGCTTGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7XRZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.917

100

0.731

Multiple sequence alignment