Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CS557_RS13625 Genome accession   NZ_CP024632
Coordinates   2891103..2893328 (+) Length   741 a.a.
NCBI ID   WP_171265918.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2886103..2898328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS13600 (CS557_13605) - 2886178..2887017 (+) 840 WP_004916742.1 HlyC/CorC family transporter -
  CS557_RS13605 (CS557_13610) lnt 2887014..2888573 (+) 1560 WP_004957572.1 apolipoprotein N-acyltransferase -
  CS557_RS13610 (CS557_13615) - 2888628..2888972 (-) 345 WP_099949272.1 hypothetical protein -
  CS557_RS13615 (CS557_13620) gspG 2889236..2889673 (-) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  CS557_RS13620 (CS557_13625) gspF 2889697..2890902 (-) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  CS557_RS13625 (CS557_13630) priA 2891103..2893328 (+) 2226 WP_171265918.1 primosomal protein N' Machinery gene
  CS557_RS13630 (CS557_13635) - 2893363..2895183 (+) 1821 WP_099949274.1 cation:proton antiporter -
  CS557_RS13635 (CS557_13640) hslO 2895303..2896178 (+) 876 WP_004957557.1 Hsp33 family molecular chaperone HslO -
  CS557_RS13640 (CS557_13645) - 2896512..2897456 (+) 945 WP_099949275.1 DnaJ C-terminal domain-containing protein -
  CS557_RS13645 (CS557_13650) - 2897468..2897794 (+) 327 WP_004957551.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84065.84 Da        Isoelectric Point: 8.4038

>NTDB_id=254598 CS557_RS13625 WP_171265918.1 2891103..2893328(+) (priA) [Acinetobacter junii strain lzh-X15]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITALLD
EDAILDQQVLTLLTWSAHYYQFPIGEVMQSALPALLRQGRALDILFHHWNILAHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLVECQLEAHDFTPMPVQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQSKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQSLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGNVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQGLRAIAADIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=254598 CS557_RS13625 WP_171265918.1 2891103..2893328(+) (priA) [Acinetobacter junii strain lzh-X15]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACCTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTGATCG
GTATCATTACCGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAACTTAAACCGATTACAGCACTTCTTGAT
GAAGACGCTATCTTAGACCAACAAGTCTTAACTTTGTTGACATGGTCTGCGCATTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTCTTAAGACAGGGTCGTGCTTTAGATATCTTATTTCACCACTGGAATATTCTTGCGC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGC
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAGGCATTGGAAAAAAAAGGACTGGTTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTGTACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATTCAACAAATACTCAAAGCTCAACAACGATACCAAGCCTTTTTACTAGATGGACTTACAGGCAGTGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGGTCCTAAAGCAAAGTAAACAAGTCTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACAGTCGCACGCTTCAAATCACGTTTTCATTGCGATGTTGCTTTACTACACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGTTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATCTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCCCTTTATCGTGGTCATTTACACAATTGCCCTGTGATTTTGGGTTCAGCTACACCAAGTATTGATAGTTATC
ATTTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATCAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTCCTAAACCGTCGAGGTTACGCTCCTGTTTTACTATGTGAAAGTTGTGGGTGGCAAGCGAACT
GCCCACATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGACGAATGCCCTGCTTGTAAACATCAATCGTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTGATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATCTTGTTAGGTACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATAGACTCAGGATTATTAAGCGTAGACCCAAGAGCACCTGAGCGCACAGCACAATT
GATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAACGTATATTTACAAAGTTTAAGACCCGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCTGTTGCAAAACAAATGCTGAGTGAGCGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTAATGGAAGCAGC
ACAAGGCTTAAGAGCTATTGCAGCAGATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.461

99.73

0.812

Multiple sequence alignment