Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   CS557_RS13080 Genome accession   NZ_CP024632
Coordinates   2788922..2789809 (-) Length   295 a.a.
NCBI ID   WP_004957789.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2783922..2794809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS13060 (CS557_13065) - 2784302..2785375 (+) 1074 WP_004916462.1 PhoH family protein -
  CS557_RS13065 (CS557_13070) ybeY 2785657..2786142 (+) 486 WP_005403646.1 rRNA maturation RNase YbeY -
  CS557_RS13070 (CS557_13075) - 2786154..2786453 (+) 300 WP_005403645.1 antibiotic biosynthesis monooxygenase family protein -
  CS557_RS13075 (CS557_13080) - 2786518..2788668 (-) 2151 WP_099949224.1 TonB-dependent siderophore receptor -
  CS557_RS13080 (CS557_13085) tonB2 2788922..2789809 (-) 888 WP_004957789.1 energy transducer TonB Machinery gene
  CS557_RS13085 (CS557_13090) - 2790054..2790731 (+) 678 WP_004957788.1 hypothetical protein -
  CS557_RS13090 (CS557_13095) - 2790925..2791641 (+) 717 WP_004916473.1 DUF3108 domain-containing protein -
  CS557_RS13095 (CS557_13100) - 2791730..2792305 (+) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  CS557_RS13100 (CS557_13105) thyA 2792464..2793306 (+) 843 WP_004957784.1 thymidylate synthase -
  CS557_RS13105 (CS557_13110) - 2793327..2793836 (+) 510 WP_004957782.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33505.04 Da        Isoelectric Point: 8.3911

>NTDB_id=254597 CS557_RS13080 WP_004957789.1 2788922..2789809(-) (tonB2) [Acinetobacter junii strain lzh-X15]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=254597 CS557_RS13080 WP_004957789.1 2788922..2789809(-) (tonB2) [Acinetobacter junii strain lzh-X15]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCTATTCGCCCTAGTACTGATAAAGTAGAAAATGCTGATTTTCTTGCTCAAGCTGATCAAAAGGGTTCAGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAGGCTGATGCGACTACTGGTGAAACTGAGTTTGA
AAGCTTAGAAAAGATTCAGCAAAAACGCGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTGAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCCATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAACGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATCTAGATAAATTCCGCCAAAAAGTTGAACTGTATGGAAATCGCTATTACCCAGATGCTG
CTAAACAACAGCGGTTATCGGGTGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGACATTCTATTTTAGATGAAGCAGCTAAGGCTTCAGTGCGCCGTGGAGCCCCTTTTGGTGCATTTGA
TTCAACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGGACTTGGCGTTTTGATCCCGTGGATGCTGAGTTTGAAG
TGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769

Multiple sequence alignment