Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DLJ63_RS17070 Genome accession   NZ_CP029576
Coordinates   3248546..3249151 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DA33135     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3243546..3254151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ63_RS17045 (DLJ63_17045) aes 3243687..3244646 (+) 960 WP_000801794.1 acetyl esterase -
  DLJ63_RS17050 (DLJ63_17050) hemH 3244643..3245605 (-) 963 WP_001250114.1 ferrochelatase -
  DLJ63_RS17055 (DLJ63_17055) adk 3245737..3246381 (-) 645 WP_001220233.1 adenylate kinase -
  DLJ63_RS17065 (DLJ63_17065) htpG 3246562..3248436 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  DLJ63_RS17070 (DLJ63_17070) recR 3248546..3249151 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DLJ63_RS17075 (DLJ63_17075) ybaB 3249151..3249480 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DLJ63_RS17080 (DLJ63_17080) dnaX 3249533..3251464 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  DLJ63_RS17085 (DLJ63_17085) apt 3251593..3252144 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DLJ63_RS17095 (DLJ63_17095) ybaN 3252297..3252674 (-) 378 WP_001188900.1 DUF454 family protein -
  DLJ63_RS17100 (DLJ63_17100) priC 3252744..3253271 (+) 528 WP_110046532.1 primosomal replication protein N'' -
  DLJ63_RS17105 (DLJ63_17105) rsmS 3253285..3253449 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=254550 DLJ63_RS17070 WP_001195025.1 3248546..3249151(-) (recR) [Escherichia coli strain DA33135]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=254550 DLJ63_RS17070 WP_001195025.1 3248546..3249151(-) (recR) [Escherichia coli strain DA33135]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment