Detailed information NTG0254525

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CTT30_RS13100
• Genome accession: NZ_CP024627
• Coordinates: 2798397..2799380 (-)
• Length: 327 a.a.
• NCBI ID: WP_239837826.1
• Uniprot ID: A0A9Q8XGC0
• Organism: Vibrio coralliilyticus strain SCSIO 43001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2793397..2804380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CTT30_RS13075 (CTT30_13135)	rimM	2793512..2794060 (-)	549	WP_252035363.1	ribosome maturation factor RimM	-
CTT30_RS13080 (CTT30_13140)	rpsP	2794090..2794338 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
CTT30_RS13085 (CTT30_13145)	ffh	2794546..2795925 (-)	1380	WP_239876864.1	signal recognition particle protein	-
CTT30_RS13090 (CTT30_13150)	-	2796134..2796928 (+)	795	WP_239837824.1	inner membrane protein YpjD	-
CTT30_RS13095 (CTT30_13155)	-	2797051..2798325 (+)	1275	WP_252035364.1	HlyC/CorC family transporter	-
CTT30_RS13100 (CTT30_13160)	rpoS	2798397..2799380 (-)	984	WP_239837826.1	RNA polymerase sigma factor RpoS	Regulator
CTT30_RS13105 (CTT30_13165)	nlpD	2799447..2800358 (-)	912	WP_252035365.1	murein hydrolase activator NlpD	-
CTT30_RS13110 (CTT30_13170)	-	2800361..2800987 (-)	627	WP_239865274.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CTT30_RS13115 (CTT30_13175)	surE	2800990..2801748 (-)	759	WP_252035366.1	5'/3'-nucleotidase SurE	-
CTT30_RS13120 (CTT30_13180)	truD	2801745..2802791 (-)	1047	WP_252035367.1	tRNA pseudouridine(13) synthase TruD	-
CTT30_RS13125 (CTT30_13185)	ispF	2802838..2803317 (-)	480	WP_252036649.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CTT30_RS13130 (CTT30_13190)	ispD	2803321..2804025 (-)	705	WP_239876863.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CTT30_RS13135 (CTT30_13195)	ftsB	2804028..2804306 (-)	279	WP_239865280.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37395.30 Da
• Isoelectric Point: 4.7232

>NTDB_id=254525 CTT30_RS13100 WP_239837826.1 2798397..2799380(-) (rpoS) [Vibrio coralliilyticus strain SCSIO 43001]
MSISNAATKVEEFELGPTMESIQASEQTTTNRTQSEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIASQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFSINEE

Nucleotide

• Length: 984 bp

>NTDB_id=254525 CTT30_RS13100 WP_239837826.1 2798397..2799380(-) (rpoS) [Vibrio coralliilyticus strain SCSIO 43001]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAGTTTGAGCTTGGACCTACAATGGAATCGATTCAAGCAAGCGAACA
GACTACTACCAACCGCACCCAATCTGAGGACGCCAAAGAGGAATTTGACGCTTCCACAAAGAGTCTGGATGCCACCCAAC
TTTACTTAGGGGAAATCGGTTTTTCTCCGCTACTCACCGCAGAAGAAGAAGTGTTGTACGCTCGCCGTGCCTTAAGAGGC
GACGAAGCTGCGCGTAAACGCATGATTGAAAGTAACCTTCGTCTAGTAGTAAAAATATCTCGTCGATATAGCAATCGTGG
TCTTGCCTTACTCGACTTAATCGAAGAGGGCAACCTTGGATTGATCCGAGCGGTTGAGAAGTTTGATCCTGAAAGAGGTT
TCCGATTTTCCACTTACGCCACATGGTGGATTCGTCAGACTATTGAACGCGCCCTGATGAATCAGACTCGTACCATTCGT
TTGCCAATTCATGTTGTCAAAGAACTCAATATTTATTTGCGTACTGCTCGAGAGCTATCACAAAAGCTTGACCATGAACC
AACGGCAGAAGAGATTGCATCACAGCTGGATAAGCCTGTTGACGATGTCAGTAAGATGCTACGCCTCAACGAACGCATTA
GCTCCGTTGATACACCGATTGGTGGTGATGGTGAGAAAGCGCTTCTGGACATTATTCCAGATGTAAATAACTCGGACCCA
GAAGTATCCACTCAAGATGATGATATTAAGTCTTCATTGATCCACTGGTTAGATGAGCTCAATCCGAAGCAGAAAGAAGT
ACTGGCTCGTCGATTTGGACTACTAGGGTATGAACCCTCTACCTTGGAAGAAGTGGGACGAGAAATCAATTTAACTCGTG
AACGCGTTCGCCAGATCCAAGTCGAAGGCTTACGCCGCTTGAGAGAGATCCTGATAAAACAGGGGCTGAATATGGAAAAT
CTATTCAGTATAAACGAAGAGTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85