Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DLJ62_RS20075 Genome accession   NZ_CP029574
Coordinates   3877174..3878601 (+) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain DA33133     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3872174..3883601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ62_RS26245 - 3872984..3873349 (+) 366 WP_224446746.1 EutP/PduV family microcompartment system protein -
  DLJ62_RS20055 (DLJ62_20055) tmaR 3873450..3873779 (-) 330 WP_000450409.1 DUF496 family protein -
  DLJ62_RS20060 (DLJ62_20060) yeeA 3873951..3875009 (-) 1059 WP_001200895.1 FUSC family protein -
  DLJ62_RS20065 (DLJ62_20065) sbmC 3875207..3875680 (-) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  DLJ62_RS20070 (DLJ62_20070) dacD 3875799..3876965 (-) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  DLJ62_RS20075 (DLJ62_20075) sbcB 3877174..3878601 (+) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  DLJ62_RS20080 (DLJ62_20080) tsuB 3878644..3878871 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DLJ62_RS20085 (DLJ62_20085) tsuA 3878885..3879943 (-) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  DLJ62_RS20090 (DLJ62_20090) plaP 3880122..3881480 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DLJ62_RS20095 (DLJ62_20095) yoeI 3881470..3881532 (-) 63 WP_010723108.1 membrane protein YoeI -
  DLJ62_RS20100 (DLJ62_20100) yeeY 3881747..3882676 (-) 930 WP_024195433.1 LysR substrate-binding domain-containing protein -
  DLJ62_RS20105 (DLJ62_20105) yeeZ 3882722..3883546 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=254490 DLJ62_RS20075 WP_000980603.1 3877174..3878601(+) (sbcB) [Escherichia coli strain DA33133]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=254490 DLJ62_RS20075 WP_000980603.1 3877174..3878601(+) (sbcB) [Escherichia coli strain DA33133]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581