Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   CTZ23_RS13915 Genome accession   NZ_CP024620
Coordinates   2878198..2878524 (-) Length   108 a.a.
NCBI ID   WP_045796511.1    Uniprot ID   -
Organism   Acinetobacter indicus strain SGAir0564     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2873198..2883524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTZ23_RS13895 (CTZ23_13955) - 2873394..2874101 (-) 708 WP_104472166.1 FHA domain-containing protein -
  CTZ23_RS13900 (CTZ23_13960) gspD 2874168..2876417 (-) 2250 WP_104989199.1 type II secretion system secretin GspD -
  CTZ23_RS13905 (CTZ23_13965) - 2876458..2877294 (-) 837 WP_104989200.1 type II secretion system protein N -
  CTZ23_RS13910 (CTZ23_13970) gspN 2877294..2878034 (-) 741 WP_104989201.1 type II secretion system protein N -
  CTZ23_RS13915 (CTZ23_13975) hns 2878198..2878524 (-) 327 WP_045796511.1 H-NS family nucleoid-associated regulatory protein Regulator
  CTZ23_RS13920 (CTZ23_13980) - 2878670..2879098 (-) 429 WP_104989202.1 acyl-CoA thioesterase -
  CTZ23_RS13925 (CTZ23_13985) - 2879109..2880302 (-) 1194 WP_087662533.1 hypothetical protein -
  CTZ23_RS13930 (CTZ23_13990) - 2880305..2881150 (-) 846 WP_104989203.1 hypothetical protein -
  CTZ23_RS13935 (CTZ23_13995) - 2881147..2881926 (-) 780 WP_104989204.1 uroporphyrinogen-III synthase -
  CTZ23_RS13940 (CTZ23_14000) hemC 2881928..2882845 (-) 918 WP_104989205.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12269.03 Da        Isoelectric Point: 8.4694

>NTDB_id=254450 CTZ23_RS13915 WP_045796511.1 2878198..2878524(-) (hns) [Acinetobacter indicus strain SGAir0564]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANVN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=254450 CTZ23_RS13915 WP_045796511.1 2878198..2878524(-) (hns) [Acinetobacter indicus strain SGAir0564]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTCCGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGTCAAT
GAAACCTGGACGGGTCGCGGTAAGCAACCACGCTGGTTAGTGGCGGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment